Re: [OMPI users] Problems using Open MPI 1.8.4 OSHMEM on Intel Xeon Phi/MIC

[Andy Riebs]

Hi Ralph, Did you solve this problem in a more general way? I finally sat down this morning to try this with the openmpi-dev-1567-g11e8c20.tar.bz2 nightly kit from last week, and can't reproduce the problem at all. Andy On 04/16/2015 12:15 PM, Ralph Castain wrote: Sorry - I had to revert the commit due to a reported MTT problem. I'll reinsert it after I get home and can debug the problem this weekend. On Thu, Apr 16, 2015 at 9:41 AM, Andy Riebs <andy.ri...@hp.com> wrote: Hi Ralph, If I did this right (NEVER a good bet :-) ), it didn't work... Using last night's master nightly, openmpi-dev-1515-gc869490.tar.bz2, I built with the same script as yesterday, but removing the LDFLAGS=-Wl, stuff: $ ./configure --prefix=/home/ariebs/mic/mpi-nightly CC="icc -mmic" CXX="icpc -mmic" \   --build=x86_64-unknown-linux-gnu --host=x86_64-k1om-linux \    AR=x86_64-k1om-linux-ar RANLIB=x86_64-k1om-linux-ranlib LD=x86_64-k1om-linux-ld \    --enable-mpirun-prefix-by-default --disable-io-romio --disable-mpi-fortran \    --enable-debug --enable-mca-no-build=btl-usnic,btl-openib,common-verbs,oob-ud $ make $ make install  ... make[1]: Leaving directory `/home/ariebs/mic/openmpi-dev-1515-gc869490/test' make[1]: Entering directory `/home/ariebs/mic/openmpi-dev-1515-gc869490' make[2]: Entering directory `/home/ariebs/mic/openmpi-dev-1515-gc869490' make  install-exec-hook make[3]: Entering directory `/home/ariebs/mic/openmpi-dev-1515-gc869490' make[3]: ./config/find_common_syms: Command not found make[3]: [install-exec-hook] Error 127 (ignored) make[3]: Leaving directory `/home/ariebs/mic/openmpi-dev-1515-gc869490' make[2]: Nothing to be done for `install-data-am'. make[2]: Leaving directory `/home/ariebs/mic/openmpi-dev-1515-gc869490' make[1]: Leaving directory `/home/ariebs/mic/openmpi-dev-1515-gc869490' $ But it seems to finish the install. I then tried to run, adding the new mca arguments: $  shmemrun -x SHMEM_SYMMETRIC_HEAP_SIZE=1M -mca plm_rsh_pass_path $PATH -mca plm_rsh_pass_libpath $MIC_LD_LIBRARY_PATH -H mic0,mic1 -n 2 ./mic.out /home/ariebs/mic/mpi-nightly/bin/orted: error while loading shared libraries: libimf.so: cannot open shared object file: No such file or directory  ... $ echo $MIC_LD_LIBRARY_PATH /opt/intel/15.0/composer_xe_2015.2.164/compiler/lib/mic:/opt/intel/15.0/composer_xe_2015.2.164/mpirt/lib/mic:/opt/intel/mic/coi/device-linux-release/lib:/opt/intel/mic/myo/lib:/opt/intel/15.0/composer_xe_2015.2.164/ipp/lib/lib/mic:/opt/intel/mic/coi/device-linux-release/lib:/opt/intel/mic/myo/lib:/opt/intel/15.0/composer_xe_2015.2.164/compiler/lib/mic:/opt/intel/15.0/composer_xe_2015.2.164/mkl/lib/mic:/opt/intel/15.0/composer_xe_2015.2.164/tbb/lib/mic $ ls /opt/intel/15.0/composer_xe_2015.2.164/compiler/lib/mic/libimf.* /opt/intel/15.0/composer_xe_2015.2.164/compiler/lib/mic/libimf.a /opt/intel/15.0/composer_xe_2015.2.164/compiler/lib/mic/libimf.so $ On 04/16/2015 07:22 AM, Ralph Castain wrote: FWIW: I just added (last night) a pair of new MCA params for this purpose: plm_rsh_pass_path <foo>   prepends the designated path to the remote shell's PATH prior to executing orted plm_rsh_pass_libpath <foo>  same thing for LD_LIBRARY_PATH I believe that will resolve the problem for Andy regardless of compiler used. In the master now, waiting for someone to verify it before adding to 1.8.5. Sadly, I am away from any cluster for the rest of this week, so I'd welcome anyone having a chance to test it. On Thu, Apr 16, 2015 at 2:57 AM, Thomas Jahns <ja...@dkrz.de> wrote: Hello, On Apr 15, 2015, at 02:11 , Gilles Gouaillardet wrote: what about reconfiguring Open MPI with LDFLAGS="-Wl,-rpath,/opt/intel/15.0/composer_xe_2015.2.164/compiler/lib/mic" ? IIRC, an other option is : LDFLAGS="-static-intel" let me first state that I have no experience developing for MIC. But regarding the Intel runtime libraries, the only sane option in my opinion is to use the icc.cfg/ifort.cfg/icpc.cfg files that get put in the same directory as the corresponding compiler binaries and add a line like -Wl,-rpath,/path/to/composerxe/lib/intel?? to that file. Regards, Thomas --  Thomas Jahns DKRZ GmbH, Department: Application software Deutsches Klimarechenzentrum Bundesstraße 45a D-20146 Hamburg Phone: +49-40-460094-151 Fax: +49-40-460094-270 Email: Thomas Jahns <ja...@dkrz.de> _______________________________________________ users mailing list us...@open-mpi.org Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/users Link to this post: http://www.open-mpi.org/community/lists/users/2015/04/26745.php _______________________________________________ users mailing list us...@open-mpi.org Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/users Link to this post: http://www.open-mpi.org/community/lists/users/2015/04/26746.php _______________________________________________ users mailing list us...@open-mpi.org Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/users Link to this post: http://www.open-mpi.org/community/lists/users/2015/04/26748.php _______________________________________________ users mailing list us...@open-mpi.org Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/users Link to this post: http://www.open-mpi.org/community/lists/users/2015/04/26749.php