I've filed this as https://github.com/open-mpi/ompi/issues/2920.
Ralph is just heading out for about a week or so; it may not get fixed until he
comes back.
> On Feb 3, 2017, at 2:03 AM, Siegmar Gross
> <siegmar.gr...@informatik.hs-fulda.de> wrote:
>
> Hi,
>
> I have installed openmpi-v2.x-201702010255-8b16747 on my "SUSE Linux
> Enterprise Server 12.2 (x86_64)" with Sun C 5.14 and gcc-6.3.0.
> Unfortunately, I get a warning from "opal_list_remove_item" about a
> missing item when I run one of my programs.
>
> loki spawn 115 mpiexec -np 1 --host loki,loki,nfs1 spawn_intra_comm
> Parent process 0: I create 2 slave processes
>
> Parent process 0 running on loki
> MPI_COMM_WORLD ntasks: 1
> COMM_CHILD_PROCESSES ntasks_local: 1
> COMM_CHILD_PROCESSES ntasks_remote: 2
> COMM_ALL_PROCESSES ntasks: 3
> mytid in COMM_ALL_PROCESSES: 0
>
> Child process 0 running on loki
> MPI_COMM_WORLD ntasks: 2
> COMM_ALL_PROCESSES ntasks: 3
> mytid in COMM_ALL_PROCESSES: 1
>
> Child process 1 running on nfs1
> MPI_COMM_WORLD ntasks: 2
> COMM_ALL_PROCESSES ntasks: 3
> mytid in COMM_ALL_PROCESSES: 2
> Warning :: opal_list_remove_item - the item 0xc45f80 is not on the list
> 0x7f5bb1f34978
> loki spawn 116
>
>
> I used the following commands to build and install the package.
> ${SYSTEM_ENV} is "Linux" and ${MACHINE_ENV} is "x86_64" for my
> Linux machine. Option "--enable-mpi-cxx-bindings is now
> unrecognized. Are cxx-bindings now automatically supported?
> "configure" reports a warning that I should report.
>
> mkdir openmpi-v2.x-201702010255-8b16747-${SYSTEM_ENV}.${MACHINE_ENV}.64_cc
> cd openmpi-v2.x-201702010255-8b16747-${SYSTEM_ENV}.${MACHINE_ENV}.64_cc
>
> ../openmpi-v2.x-201702010255-8b16747/configure \
> --prefix=/usr/local/openmpi-2.1.0_64_cc \
> --libdir=/usr/local/openmpi-2.1.0_64_cc/lib64 \
> --with-jdk-bindir=/usr/local/jdk1.8.0_66/bin \
> --with-jdk-headers=/usr/local/jdk1.8.0_66/include \
> JAVA_HOME=/usr/local/jdk1.8.0_66 \
> LDFLAGS="-m64 -mt -Wl,-z -Wl,noexecstack" CC="cc" CXX="CC" FC="f95" \
> CFLAGS="-m64 -mt" CXXFLAGS="-m64" FCFLAGS="-m64" \
> CPP="cpp" CXXCPP="cpp" \
> --enable-mpi-cxx \
> --enable-mpi-cxx-bindings \
> --enable-cxx-exceptions \
> --enable-mpi-java \
> --enable-mpi-thread-multiple \
> --with-hwloc=internal \
> --without-verbs \
> --with-wrapper-cflags="-m64 -mt" \
> --with-wrapper-cxxflags="-m64" \
> --with-wrapper-fcflags="-m64" \
> --with-wrapper-ldflags="-mt" \
> --enable-debug \
> |& tee log.configure.$SYSTEM_ENV.$MACHINE_ENV.64_cc
>
> make |& tee log.make.$SYSTEM_ENV.$MACHINE_ENV.64_cc
> rm -r /usr/local/openmpi-2.1.0_64_cc.old
> mv /usr/local/openmpi-2.1.0_64_cc /usr/local/openmpi-2.1.0_64_cc.old
> make install |& tee log.make-install.$SYSTEM_ENV.$MACHINE_ENV.64_cc
> make check |& tee log.make-check.$SYSTEM_ENV.$MACHINE_ENV.64_cc
>
>
>
>
> ...
> checking numaif.h usability... no
> checking numaif.h presence... yes
> configure: WARNING: numaif.h: present but cannot be compiled
> configure: WARNING: numaif.h: check for missing prerequisite headers?
> configure: WARNING: numaif.h: see the Autoconf documentation
> configure: WARNING: numaif.h: section "Present But Cannot Be Compiled"
> configure: WARNING: numaif.h: proceeding with the compiler's result
> configure: WARNING: ##
> ------------------------------------------------------ ##
> configure: WARNING: ## Report this to
> http://www.open-mpi.org/community/help/ ##
> configure: WARNING: ##
> ------------------------------------------------------ ##
> checking for numaif.h... no
> ...
>
>
> I would be grateful, if somebody can fix the problems. do you need anything
> else? Thank you very much for any help in advance.
>
>
> Kind regards
>
> Siegmar
> <spawn_intra_comm.c>_______________________________________________
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--
Jeff Squyres
jsquy...@cisco.com
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