There is a sequential version of the same program COSMO (no reference to MPI) that I can run without any problems. Of course it takes a lot longer to complete. Now I also ran valgrind (not sure whether that is useful or not) and I have enclosed the logs.
On Sat, Jun 17, 2017 at 7:20 PM, ashwin .D <winas...@gmail.com> wrote: > Hello Gilles, > I am enclosing all the information you requested. > > 1) as an attachment I enclose the log file > 2) I did rebuild OpenMPI 2.1.1 with the --enable-debug feature and I > reinstalled it /usr/lib/local. > I ran all the examples in the examples directory. All passed except > oshmem_strided_puts where I got this message > > [[48654,1],0][pshmem_iput.c:70:pshmem_short_iput] Target PE #1 is not in > valid range > -------------------------------------------------------------------------- > SHMEM_ABORT was invoked on rank 0 (pid 13409, host=a-Vostro-3800) with > errorcode -1. > -------------------------------------------------------------------------- > > > 3) I deleted all old OpenMPI versions under /usr/local/lib. > 4) I am using the COSMO weather model - http://www.cosmo-model.org/ to > run simulations > The support staff claim they have seen no errors with a similar setup. > They use > > 1) gfortran 4.8.5 > 2) OpenMPI 1.10.1 > > The only difference is I use OpenMPI 2.1.1. > > 5) I did try this option as well mpirun --mca btl tcp,self -np 4 cosmo. > and I got the same error as in the mpi_logs file > > 6) Regarding compiler and linking options on Ubuntu 16.04 > > mpif90 --showme:compile and --showme:link give me the options for > compiling and linking. > > Here are the options from my makefile > > -pthread -lmpi_usempi -lmpi_mpifh -lmpi for linking > > 7) I have a 64 bit OS. > > Well I think I have responded all of your questions. In any case I have > not please let me know and I will respond ASAP. The only thing I have not > done is look at /usr/local/include. I saw some old OpenMPI files there. If > those need to be deleted I will do after I hear from you. > > Best regards, > Ashwin. > >
logs
Description: Binary data
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