The stdin and stdout are saved to separate channels. It is interesting that the output from pbsdsh is node21.emperor 5 times, even though $PBS_NODES is the 5 individual nodes.
Attached are the two compressed files, as well as the pbs_hello batch used.
Anthony Thyssen ( System Programmer ) <a.thys...@griffith.edu.au>
--------------------------------------------------------------------------
There are two types of encryption:
One that will prevent your sister from reading your diary, and
One that will prevent your government. -- Bruce Schneier
--------------------------------------------------------------------------
On Tue, Oct 3, 2017 at 2:39 PM, Gilles Gouaillardet <gil...@rist.or.jp>
wrote:
> Anthony,
>
>
> in your script, can you
>
>
> set -x
>
> env
>
> pbsdsh hostname
>
> mpirun --display-map --display-allocation --mca ess_base_verbose 10 --mca
> plm_base_verbose 10 --mca ras_base_verbose 10 hostname
>
>
> and then compress and send the output ?
>
>
> Cheers,
>
>
> Gilles
>
>
> On 10/3/2017 1:19 PM, Anthony Thyssen wrote:
>
>> I noticed that too. Though the submitting host for torque is a different
>> host (main head node, "shrek"), "node21" is the host that torque runs the
>> batch script (and the mpirun command) it being the first node in the
>> "dualcore" resource group.
>>
>> Adding option...
>>
>> It fixed the hostname in the allocation map, though had no effect on the
>> outcome. The allocation is still simply ignored.
>>
>> =======8<--------CUT HERE----------
>> PBS Job Number 9000
>> PBS batch run on node21.emperor
>> Time it was started 2017-10-03_14:11:20
>> Current Directory /net/shrek.emperor/home/shrek/anthony
>> Submitted work dir /home/shrek/anthony/mpi-pbs
>> Number of Nodes 5
>> Nodefile List /var/lib/torque/aux//9000.shrek.emperor
>> node21.emperor
>> node25.emperor
>> node24.emperor
>> node23.emperor
>> node22.emperor
>> ---------------------------------------
>>
>> ====================== ALLOCATED NODES ======================
>> node21.emperor: slots=1 max_slots=0 slots_inuse=0 state=UP
>> node25.emperor: slots=1 max_slots=0 slots_inuse=0 state=UP
>> node24.emperor: slots=1 max_slots=0 slots_inuse=0 state=UP
>> node23.emperor: slots=1 max_slots=0 slots_inuse=0 state=UP
>> node22.emperor: slots=1 max_slots=0 slots_inuse=0 state=UP
>> =================================================================
>> node21.emperor
>> node21.emperor
>> node21.emperor
>> node21.emperor
>> node21.emperor
>> =======8<--------CUT HERE----------
>>
>>
>> Anthony Thyssen ( System Programmer ) <a.thys...@griffith.edu.au
>> <mailto:a.thys...@griffith.edu.au>>
>> -----------------------------------------------------------
>> ---------------
>> The equivalent of an armoured car should always be used to
>> protect any secret kept in a cardboard box.
>> -- Anthony Thyssen, On the use of Encryption
>> -----------------------------------------------------------
>> ---------------
>>
>>
>>
>>
>> _______________________________________________
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>> https://lists.open-mpi.org/mailman/listinfo/users
>>
>
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>
pbs_hello
Description: Binary data
pbs_hello.e9002.gz
Description: GNU Zip compressed data
pbs_hello.o9002.gz
Description: GNU Zip compressed data
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