Hi there,

Honestly don’t know which piece of this puzzle to look at or how to get more 
information for troubleshooting. I successfully built HDF5 1.10.4 with RHEL 
system GCC 4.8.5 and OpenMPI 3.1.3. Running the “make check” in HDF5 is failing 
at the below point; I am using a value of RUNPARALLEL='srun --mpi=pmi2 -p main 
-t 1:00:00 -n6 -N1’ and have a SLURM that’s otherwise properly configured.

Thanks for any help you can provide.

make[4]: Entering directory 
`/scratch/novosirj/install-files/hdf5-1.10.4-build-gcc-4.8-openmpi-3.1.3/testpar'
============================
Testing  t_mpi
============================
t_mpi  Test Log
============================
srun: job 84126610 queued and waiting for resources
srun: job 84126610 has been allocated resources
srun: error: slepner023: tasks 0-5: Alarm clock
0.01user 0.00system 20:03.95elapsed 0%CPU (0avgtext+0avgdata 5152maxresident)k
0inputs+0outputs (0major+1529minor)pagefaults 0swaps
make[4]: *** [t_mpi.chkexe_] Error 1
make[4]: Leaving directory 
`/scratch/novosirj/install-files/hdf5-1.10.4-build-gcc-4.8-openmpi-3.1.3/testpar'
make[3]: *** [build-check-p] Error 1
make[3]: Leaving directory 
`/scratch/novosirj/install-files/hdf5-1.10.4-build-gcc-4.8-openmpi-3.1.3/testpar'
make[2]: *** [test] Error 2
make[2]: Leaving directory 
`/scratch/novosirj/install-files/hdf5-1.10.4-build-gcc-4.8-openmpi-3.1.3/testpar'
make[1]: *** [check-am] Error 2
make[1]: Leaving directory 
`/scratch/novosirj/install-files/hdf5-1.10.4-build-gcc-4.8-openmpi-3.1.3/testpar'
make: *** [check-recursive] Error 1

--
____
|| \\UTGERS,     |---------------------------*O*---------------------------
||_// the State  |         Ryan Novosielski - novos...@rutgers.edu
|| \\ University | Sr. Technologist - 973/972.0922 (2x0922) ~*~ RBHS Campus
||  \\    of NJ  | Office of Advanced Research Computing - MSB C630, Newark
   `'

Attachment: signature.asc
Description: Message signed with OpenPGP

_______________________________________________
users mailing list
users@lists.open-mpi.org
https://lists.open-mpi.org/mailman/listinfo/users

Reply via email to