Hi there, Honestly don’t know which piece of this puzzle to look at or how to get more information for troubleshooting. I successfully built HDF5 1.10.4 with RHEL system GCC 4.8.5 and OpenMPI 3.1.3. Running the “make check” in HDF5 is failing at the below point; I am using a value of RUNPARALLEL='srun --mpi=pmi2 -p main -t 1:00:00 -n6 -N1’ and have a SLURM that’s otherwise properly configured.
Thanks for any help you can provide. make[4]: Entering directory `/scratch/novosirj/install-files/hdf5-1.10.4-build-gcc-4.8-openmpi-3.1.3/testpar' ============================ Testing t_mpi ============================ t_mpi Test Log ============================ srun: job 84126610 queued and waiting for resources srun: job 84126610 has been allocated resources srun: error: slepner023: tasks 0-5: Alarm clock 0.01user 0.00system 20:03.95elapsed 0%CPU (0avgtext+0avgdata 5152maxresident)k 0inputs+0outputs (0major+1529minor)pagefaults 0swaps make[4]: *** [t_mpi.chkexe_] Error 1 make[4]: Leaving directory `/scratch/novosirj/install-files/hdf5-1.10.4-build-gcc-4.8-openmpi-3.1.3/testpar' make[3]: *** [build-check-p] Error 1 make[3]: Leaving directory `/scratch/novosirj/install-files/hdf5-1.10.4-build-gcc-4.8-openmpi-3.1.3/testpar' make[2]: *** [test] Error 2 make[2]: Leaving directory `/scratch/novosirj/install-files/hdf5-1.10.4-build-gcc-4.8-openmpi-3.1.3/testpar' make[1]: *** [check-am] Error 2 make[1]: Leaving directory `/scratch/novosirj/install-files/hdf5-1.10.4-build-gcc-4.8-openmpi-3.1.3/testpar' make: *** [check-recursive] Error 1 -- ____ || \\UTGERS, |---------------------------*O*--------------------------- ||_// the State | Ryan Novosielski - novos...@rutgers.edu || \\ University | Sr. Technologist - 973/972.0922 (2x0922) ~*~ RBHS Campus || \\ of NJ | Office of Advanced Research Computing - MSB C630, Newark `'
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