On Thu, Nov 24, 2011 at 9:31 PM, DONG Rui <rdong at ncsu.edu> wrote: > Hi all > > I was compiling espresso on a Redhat machine, with PBS and mpi-intel > library, > > it seems I can't use the flag "--disable-shared", once I do so,? I got the > following in make.sys > DFLAGS???????? =? -D__INTEL -D__FFTW3 > there is no "-D__MPI -D__PARA", and if I add these two by hand in make.sys, > it complained with error. > > If I did simply "./configure" in espresso top directory, then change the > BLAS/LAPACK library to internal by hand, > I got the following error in running.(compilation is successful.) > > /home/***/pw.x: symbol lookup error: > /opt/openmpi/1.4.3/intel/lib/libopen-pal.so.0: undefined symbol: > __intel_sse2_strcpy > /home/***/pw.x: symbol lookup error: > /opt/openmpi/1.4.3/intel/lib/libopen-pal.so.0: undefined symbol: > __intel_sse2_strcpy > /home/***/pw.x: symbol lookup error: > /opt/openmpi/1.4.3/intel/lib/libopen-pal.so.0: undefined symbol: > __intel_sse2_strcpy > /home/***/pw.x: symbol lookup error: > /opt/openmpi/1.4.3/intel/lib/libopen-pal.so.0: undefined symbol: > __intel_sse2_strcpy
this is an error caused by the local OpenMPI installation. you need to contact the genius that set this up. axel. > and I think I already source all the necessary lib in the batch script like > the below: > > #PBS -l nodes=1:ppn=4 > #PBS -l walltime=00:01:00 > source /opt/intel/Compiler/11.1/072/bin/ifortvars.sh intel64 > source /opt/intel/fce/10.1.012/bin/ifortvars.sh > source /opt/intel/cce/10.1.012/bin/iccvars.sh > #source /opt/openmpi/1.4.3/intel/bin/ > export > LD_LIBRARY_PATH=/opt/intel/Compiler/11.1/072/mkl/lib/em64t:/opt/openmpi/1.4.3/intel/lib:/opt/intel/fce/10.1.012/lib:/opt/pbs/lib64 > > Does anyone have any idea of what is going on here? > > Thank you all for reading this! > > -- > Sincerely, > > Rui DONG > > _______________________________________________ > Pw_forum mailing list > Pw_forum at pwscf.org > http://www.democritos.it/mailman/listinfo/pw_forum > > -- Dr. Axel Kohlmeyer akohlmey at gmail.com ?http://goo.gl/1wk0 College of Science and Technology Temple University, Philadelphia PA, USA.
