hello
what is the output of
addr2line -p -e ph.x 00000000004BE229
and what version of ph are you using ?
On 07/08/2018 17:06, Holzwarth, Natalie wrote:
This segmentation fault issue has also appeared for us in another QE
code. Perhaps it is a totally unrelated problem which we find
related to the openmpi package compiled with intel-3.1.1-2018 and
intel-3.1.0-2018. In our case, compiling with openmpi package
compiled with intel-2.1.0-2018 usually (not always) solves the
problem. Compiling with a much older openmpi package solves the
problem, but is not viable for the current configuration of our
cluster. Since no one else mentioned the problem until now, we think
it may have to do with our internal setup??? The error is very
intermittent, occurring at different places in the code for the same
input. The common aspect of this error to the one in the original
message is libpthread-2.12.so <http://libpthread-2.12.so>. Most
reliably we see the error in ph.x with part of the error message:
forrtl: severe (174): SIGSEGV, segmentation fault occurred
Image PC Routine Line Source
ph.x 0000000000D99A1D for__signal_handl Unknown Unknown
libpthread-2.12.s 0000003271E0F7E0 Unknown Unknown Unknown
mca_btl_vader.so 00002AB74BBB99A7 Unknown Unknown Unknown
libopen-pal.so.40 00002AB738AD3A54 opal_progress Unknown Unknown
libmpi.so.40.10.1 00002AB7384DBC04 ompi_request_defa Unknown Unknown
libmpi.so.40.10.1 00002AB7385384C5 ompi_coll_base_ba Unknown Unknown
libmpi.so.40.10.1 00002AB7384F26F1 MPI_Barrier Unknown Unknown
libmpi_mpifh.so.4 00002AB73826D013 MPI_Barrier_f08 Unknown Unknown
ph.x 0000000000BA9E0E Unknown Unknown Unknown
ph.x 0000000000B9835B Unknown Unknown Unknown
ph.x 000000000057FE26 Unknown Unknown Unknown
ph.x 00000000004BE229 Unknown Unknown Unknown
ph.x 00000000004A0F10 Unknown Unknown Unknown
ph.x 0000000000415A65 Unknown Unknown Unknown
ph.x 000000000040EE73 Unknown Unknown Unknown
ph.x 000000000040EDDE Unknown Unknown Unknown
libc-2.12.so <http://libc-2.12.so> 000000327161ED1D
__libc_start_main Unknown Unknown
ph.x 000000000040ECE9 Unknown Unknown Unknown
I am very curious about whether you think this may be related or
totally unrelated. Thanks, Natalie Holzwarth
N. A. W. Holzwarth email: [email protected] <mailto:[email protected]>
Department of Physics web: http://www.wfu.edu/~natalie
<http://www.wfu.edu/%7Enatalie>
Wake Forest University phone: 1-336-758-5510
Winston-Salem, NC 27109 USA office: Rm. 300 Olin Physical Lab
On Tue, Aug 7, 2018 at 8:18 AM, Davide Ceresoli
<[email protected] <mailto:[email protected]>> wrote:
Dear Ben,
I'm afraid it's a problem with MKL-blas ZDOTC, which must
return a complex(dp) result. Very strange, because if you grep
the source code, we have declared it: complex(dp), external::zdtoc
Can you tell us your compiler and MKL version? can you add
DFLAGS+=-Dzdotc=zdotc_wrapper
to the QE make.inc and recompile both (QE and GIPAW)?
Best wishes,
Davide
On 08/06/2018 03:19 PM, Ben Comer wrote:
Hello,
I've been trying to do g factor calculations in GIPAW working
for a few days now. I keep getting a segmentation fault
(below) no matter how I compile it on our cluster. Does anyone
have a good idea of what might be causing this?
forrtl: severe (174): SIGSEGV, segmentation fault occurred
Image PC Routine Line Source
gipaw.x 0000000000C40604 Unknown Unknown Unknown
libpthread-2.12.s 000000328DE0F7E0 Unknown Unknown Unknown
libmkl_avx2.so 00002AAAB7DA5CA3 mkl_blas_avx2_zdo
Unknown Unknown
Thanks,
Ben Comer
Georgia Tech
--
+--------------------------------------------------------------+
Davide Ceresoli
CNR Institute of Molecular Science and Technology (CNR-ISTM)
c/o University of Milan, via Golgi 19, 20133 Milan, Italy
Email: [email protected]
<mailto:[email protected]>
Phone: +39-02-50314276, +39-347-1001570 (mobile)
Skype: dceresoli
+--------------------------------------------------------------+
_______________________________________________
users mailing list
[email protected]
<mailto:[email protected]>
https://lists.quantum-espresso.org/mailman/listinfo/users
<https://lists.quantum-espresso.org/mailman/listinfo/users>
_______________________________________________
users mailing list
[email protected]
https://lists.quantum-espresso.org/mailman/listinfo/users
_______________________________________________
users mailing list
[email protected]
https://lists.quantum-espresso.org/mailman/listinfo/users
