HI David, Have you attempted to compile with MPICH or OpenMPI? If so, can you provide the output files after running an example calculation?
Thanks, On Feb 13, 2019, at 5:11 PM, DAVID BARCENE <[email protected]<mailto:[email protected]>> wrote: Hello, I'm new to quantum espresso and I'm having some issues while running the examples. I installed QE in my laptop (Lenovo Thinkpad E480, i7-8550U running Fedora 29) using intel mpi to take advantage of the quad core cpu. I have compiled QE using the intel fortran compiler and intel C compiler including the MKL provided by the Intel Paralell Studio XE 2019 update 1 cluster edition. No warnings or errors were shown during the compilation but when I run the example ~/qe-6.3/PW/examples/example01 it just aborts. A forum suggested to set FI_LOG_LEVEL= debug to collect logs and this is the output I get: ******************************************************************************************************************************************** [dbarcene@NGC2501 example01]$ ./run_example /home/dbarcene/qe-6.3/PW/examples/example01 : starting This example shows how to use pw.x to calculate the total energy and the band structure of four simple systems: Si, Al, Cu, Ni. executables directory: /home/dbarcene/qe-6.3/bin pseudo directory: /home/dbarcene/qe-6.3/pseudo temporary directory: /home/dbarcene/qe-6.3/tempdir checking that needed directories and files exist... done running pw.x as: mpirun -np 4 /home/dbarcene/qe-6.3/bin/pw.x -nk 1 -nd 1 -nb 1 -nt 1 running the scf calculation for Si...Abort(1094543) on node 1 (rank 1 in comm 0): Fatal error in PMPI_Init: Other MPI error, error stack: MPIR_Init_thread(639)......: MPID_Init(860).............: MPIDI_NM_mpi_init_hook(689): OFI addrinfo() failed (ofi_init.h:689:MPIDI_NM_mpi_init_hook:No data available) Abort(1094543) on node 2 (rank 2 in comm 0): Fatal error in PMPI_Init: Other MPI error, error stack: MPIR_Init_thread(639)......: MPID_Init(860).............: MPIDI_NM_mpi_init_hook(689): OFI addrinfo() failed (ofi_init.h:689:MPIDI_NM_mpi_init_hook:No data available) Abort(1094543) on node 3 (rank 3 in comm 0): Fatal error in PMPI_Init: Other MPI error, error stack: MPIR_Init_thread(639)......: MPID_Init(860).............: MPIDI_NM_mpi_init_hook(689): OFI addrinfo() failed (ofi_init.h:689:MPIDI_NM_mpi_init_hook:No data available) Abort(1094543) on node 0 (rank 0 in comm 0): Fatal error in PMPI_Init: Other MPI error, error stack: MPIR_Init_thread(639)......: MPID_Init(860).............: MPIDI_NM_mpi_init_hook(689): OFI addrinfo() failed (ofi_init.h:689:MPIDI_NM_mpi_init_hook:No data available) [cli_1]: readline failed forrtl: error (78): process killed (SIGTERM) Image PC Routine Line Source pw.x 0000000001A5EAC4 Unknown Unknown Unknown libpthread-2.28.s 00007FE6FEB3B030 Unknown Unknown Unknown pw.x 00000000011BF2F0 Unknown Unknown Unknown pw.x 0000000000CBA309 Unknown Unknown Unknown pw.x 0000000000CB9D37 Unknown Unknown Unknown pw.x 0000000000407286 Unknown Unknown Unknown pw.x 0000000000407222 Unknown Unknown Unknown libc-2.28.so 00007FE6FADC0413 __libc_start_main Unknown Unknown pw.x 000000000040712E Unknown Unknown Unknown forrtl: error (78): process killed (SIGTERM) Image PC Routine Line Source pw.x 0000000001A5EAC4 Unknown Unknown Unknown libpthread-2.28.s 00007F05A7AEF030 Unknown Unknown Unknown libpthread-2.28.s 00007F05A7AEDDC0 __read Unknown Unknown libmpi.so.12.0.0 00007F05A65D399F Unknown Unknown Unknown libmpi.so.12.0.0 00007F05A65D2D32 Unknown Unknown Unknown libmpi.so.12.0.0 00007F05A4C158D0 Unknown Unknown Unknown libmpi.so.12.0.0 00007F05A4CC6613 MPIR_Err_return_c Unknown Unknown libmpi.so.12.0.0 00007F05A58AA299 MPI_Init Unknown Unknown libmpifort.so.12. 00007F05A40114EB MPI_INIT Unknown Unknown pw.x 0000000000CBA2F8 Unknown Unknown Unknown pw.x 0000000000CB9D37 Unknown Unknown Unknown pw.x 0000000000407286 Unknown Unknown Unknown pw.x 0000000000407222 Unknown Unknown Unknown libc-2.28.so 00007F05A3D74413 __libc_start_main Unknown Unknown pw.x 000000000040712E Unknown Unknown Unknown forrtl: error (78): process killed (SIGTERM) Image PC Routine Line Source pw.x 0000000001A5EAC4 Unknown Unknown Unknown libpthread-2.28.s 00007F73A282A030 Unknown Unknown Unknown libpthread-2.28.s 00007F73A2828DC0 __read Unknown Unknown libmpi.so.12.0.0 00007F73A130E99F Unknown Unknown Unknown libmpi.so.12.0.0 00007F73A130DD32 Unknown Unknown Unknown libmpi.so.12.0.0 00007F739F9508D0 Unknown Unknown Unknown libmpi.so.12.0.0 00007F739FA01613 MPIR_Err_return_c Unknown Unknown libmpi.so.12.0.0 00007F73A05E5299 MPI_Init Unknown Unknown libmpifort.so.12. 00007F739ED4C4EB MPI_INIT Unknown Unknown pw.x 0000000000CBA2F8 Unknown Unknown Unknown pw.x 0000000000CB9D37 Unknown Unknown Unknown pw.x 0000000000407286 Unknown Unknown Unknown pw.x 0000000000407222 Unknown Unknown Unknown libc-2.28.so 00007F739EAAF413 __libc_start_main Unknown Unknown pw.x 000000000040712E Unknown Unknown Unknown forrtl: error (78): process killed (SIGTERM) Image PC Routine Line Source pw.x 0000000001A5EAC4 Unknown Unknown Unknown libpthread-2.28.s 00007F114000F030 Unknown Unknown Unknown libpthread-2.28.s 00007F114000DDC0 __read Unknown Unknown libmpi.so.12.0.0 00007F113EAF399F Unknown Unknown Unknown libmpi.so.12.0.0 00007F113EAF2D32 Unknown Unknown Unknown libmpi.so.12.0.0 00007F113D1358D0 Unknown Unknown Unknown libmpi.so.12.0.0 00007F113D1E6613 MPIR_Err_return_c Unknown Unknown libmpi.so.12.0.0 00007F113DDCA299 MPI_Init Unknown Unknown libmpifort.so.12. 00007F113C5314EB MPI_INIT Unknown Unknown pw.x 0000000000CBA2F8 Unknown Unknown Unknown pw.x 0000000000CB9D37 Unknown Unknown Unknown pw.x 0000000000407286 Unknown Unknown Unknown pw.x 0000000000407222 Unknown Unknown Unknown libc-2.28.so 00007F113C294413 __libc_start_main Unknown Unknown pw.x 000000000040712E Unknown Unknown Unknown Error condition encountered during test: exit status = 179 Aborting *************************************************************************************************************************************** Thanks in advance for any help you may provide. All the best David Barcene ***************Este mensaje (y sus adjuntos), en adelante "mensaje", ha sido enviado exclusivamente a su(s) destinatario(s) y es confidencial. Si usted recibe este mensaje por error, por favor bórrelo y comunique inmediatamente al remitente. Toda utilización o publicación, total o parcial, queda prohibida salvo autorización expresa. La UTP no podrá ser considerada responsable si el mensaje ha sido modificado y/o utilizado sin autorización. This message (and any attachments), are confidential intended solely for the people whose addresses appear. If you have received this message by error, please delete it and immediately notify the sender. Any use, dissemination or disclosure, either whole or partial, without formal approval is prohibited. The UTP will not therefore be liable for the message if modified and/or used without approval.************** _______________________________________________ users mailing list [email protected]<mailto:[email protected]> https://lists.quantum-espresso.org/mailman/listinfo/users William DeBenedetti Cornell University
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