On Tue, Nov 5, 2019 at 10:36 PM Paolo Giannozzi <[email protected]> wrote:
Yes, I was referring to the "develop" branch of https://gitlab.com/QEF/q-e > Just a clarification: https://github.com/QEF/q-e is a mirror that is automatically aligned to the above gitlab repository Paolo . There is no need for the "-D__BEOWULF" option any more. There is nothing > I can do unless there is some hint of why and for which file FoX fails > > Paolo > > On Tue, Nov 5, 2019 at 10:21 PM Ben Comer <[email protected]> wrote: > >> Thanks for the help, >> >> Paolo, >> >> to confirm, the development version is the "develop" branch of the repo >> below? Compiling this code also yields the same error. I presume that I >> don't need the -D__BEOWULF flag that Pietro recommends. I also the error I >> have listed below thew "ERROR(FoX) Cannot open file" errors. >> >> https://github.com/QEF/q-e >> >> [rich133-k35-19-l.pace.gatech.edu:mpi_rank_0][handle_cqe] Send desc >> error in msg to 28, wc_opcode=0 >> [rich133-k35-19-l.pace.gatech.edu:mpi_rank_0][handle_cqe] Msg from 28: >> wc.status=12, wc.wr_id=0x2a60fb0, wc.opcode=0, vbuf->phead->type=0 = >> MPIDI_CH3_PKT_EAGER_SEND >> [rich133-k35-19-l.pace.gatech.edu:mpi_rank_0][handle_cqe] >> src/mpid/ch3/channels/mrail/src/gen2/ibv_channel_manager.c:547: [] Got >> completion with error 12, vendor code=0x81, dest rank=28 >> : Inappropriate ioctl for device (25) >> >> On 11/4/19 12:22 PM, Paolo Giannozzi wrote: >> >> Try the development version, that no longer assumes that all files are >> readable by all processors. >> >> Paolo >> >> On Mon, Nov 4, 2019 at 5:22 PM Ben Comer <[email protected]> wrote: >> >>> Pietro, >>> >>> I am running quantum espresso with 56 cores across 2 nodes (28 cores per >>> node) when I receive this error. The error does not appear when I am >>> running on a single node (I've tested 1,2,4,8,16, and 28 cores on a >>> single node.) However, all runs that involve more than one node do have >>> this issue. Previous messages implied that this was because the nodes >>> did not share a common file system, which is the case for our cluster. >>> Each node has it's own /tmp directory located on each node. Please let >>> me know if I can provide more information. >>> >>> On 11/4/19 11:08 AM, Pietro Davide Delugas wrote: >>> > Dear Ben Comer. >>> > The flag is not valid any more. In fact It was not a fix just a >>> > configure option to select the old file format rather than the new one. >>> > >>> > The old format is no longer supported, that is why the option is not >>> > recognized by the configure anymore. >>> > >>> > Cannot open file means that the program is not finding some file. >>> > Could you give more details on how you are running the code in order >>> > to understand why the error issues? >>> > >>> > best regards - Pietro >>> > >>> > >>> > >>> > On 11/4/19 4:56 PM, Ben Comer wrote: >>> >> Hello, >>> >> >>> >> Since I've switched from espresso 5 to espresso 6.4.1 I've gotten the >>> >> "ERROR(FoX) Cannot open file" error when running across nodes. I see >>> in >>> >> the mailing list that the prescribed fix for this is to recompile with >>> >> the "--enable-xml=no" flag in the "./configure" step. However, when I >>> do >>> >> this I get a warning saying that the flag was not recognized and I >>> >> continue to get the error after compilation. Is there any new fix for >>> >> this issue? >>> >> >>> >> Thanks, >>> >> >>> >> Ben Comer >>> >> Georgia Tech >>> >> >>> >> _______________________________________________ >>> >> Quantum ESPRESSO is supported by MaX >>> >> (www.max-centre.eu/quantum-espresso) >>> >> users mailing list [email protected] >>> >> https://lists.quantum-espresso.org/mailman/listinfo/users >>> > >>> > >>> > _______________________________________________ >>> > Quantum ESPRESSO is supported by MaX ( >>> www.max-centre.eu/quantum-espresso) >>> > users mailing list [email protected] >>> > https://lists.quantum-espresso.org/mailman/listinfo/users >>> _______________________________________________ >>> Quantum ESPRESSO is supported by MaX (www.max-centre.eu/quantum-espresso >>> ) >>> users mailing list [email protected] >>> https://lists.quantum-espresso.org/mailman/listinfo/users >> >> >> >> -- >> Paolo Giannozzi, Dip. Scienze Matematiche Informatiche e Fisiche, >> Univ. Udine, via delle Scienze 208, 33100 Udine, Italy >> Phone +39-0432-558216, fax +39-0432-558222 >> >> >> _______________________________________________ >> Quantum ESPRESSO is supported by MaX (www.max-centre.eu/quantum-espresso) >> users mailing list >> [email protected]https://lists.quantum-espresso.org/mailman/listinfo/users >> >> _______________________________________________ >> Quantum ESPRESSO is supported by MaX (www.max-centre.eu/quantum-espresso) >> users mailing list [email protected] >> https://lists.quantum-espresso.org/mailman/listinfo/users > > > > -- > Paolo Giannozzi, Dip. Scienze Matematiche Informatiche e Fisiche, > Univ. Udine, via delle Scienze 208, 33100 Udine, Italy > Phone +39-0432-558216, fax +39-0432-558222 > > -- Paolo Giannozzi, Dip. Scienze Matematiche Informatiche e Fisiche, Univ. Udine, via delle Scienze 208, 33100 Udine, Italy Phone +39-0432-558216, fax +39-0432-558222
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