I get negative frequencies at gamma points for Bilayer MoS2. I relaxed my structure and checked convergence with respect to energy cutoff. That's my input file for the scf calculation:
############## &CONTROL calculation ='scf' prefix = 'MoS2_BI' pseudo_dir = '/home/Giuseppe' outdir = './' tstress = .true. tprnfor = .true. forc_conv_thr = 1.0d-3 nstep = 200 / &SYSTEM ibrav = 4 a = 3.1429635960300000000 c = 20.006663000000000000 nat = 6 ntyp = 2 ecutwfc = 60 ecutrho = 240 occupations = 'smearing' degauss = 0.01 / &ELECTRONS mixing_beta = 0.7 conv_thr = 1.0d-8 diagonalization = 'david' electron_maxstep=200 / &IONS trust_radius_max = 0.2 / &CELL cell_dynamics = "bfgs" cell_dofree = '2Dxy' / ATOMIC_SPECIES Mo 95.9400 Mo.pbesol-spn-kjpaw_psl.1.0.0.UPF S 32.0660 S.pbesol-n-kjpaw_psl.1.0.0.UPF ATOMIC_POSITIONS {angstrom} Mo 1.5714815237 0.9072955423 6.6890512735 Mo 0.0000000000 1.8145901001 13.377562735 S 1.5714815237 0.9072955423 11.825385701 S 1.5714815237 0.9072955423 14.928508325 S 0.0000000000 1.8145901001 8.2412092563 S 0.0000000000 1.8145901001 5.1381015776 K_POINTS {automatic} 4 4 4 0 0 0 ######### And here my input file for ph.x ####### &inputph prefix = 'MoS2_BI' fildvscf = 'dvscf' ldisp = .true. fildyn = 'MoS2_BI.dyn' alpha_mix(1) = 0.3 nq1 = 2, nq2 = 2, nq3 = 2, tr2_ph = 1.0d-12 / ######## Is my bilayer wrong? I've come the exact same calculations for Bulk and Monolayer MoS2 and everything went smoothly
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