Here's some code. At this time, it works only properly with adbe.pkcs7.detached signatures. I don't know whether it checks advanced stuff like certificate chain, revocation lists, etc. But it can detect that a file was changed. Enjoy.
Tilman

/*
 * Licensed to the Apache Software Foundation (ASF) under one or more
 * contributor license agreements.  See the NOTICE file distributed with
 * this work for additional information regarding copyright ownership.
 * The ASF licenses this file to You under the Apache License, Version 2.0
 * (the "License"); you may not use this file except in compliance with
 * the License.  You may obtain a copy of the License at
 *
 *      http://www.apache.org/licenses/LICENSE-2.0
 *
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS,
 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 * See the License for the specific language governing permissions and
 * limitations under the License.
 */
package org.apache.pdfbox.examples.signature;

import java.io.ByteArrayInputStream;
import java.io.File;
import java.io.IOException;
import java.io.RandomAccessFile;
import java.security.InvalidKeyException;
import java.security.NoSuchAlgorithmException;
import java.security.NoSuchProviderException;
import java.security.SignatureException;
import java.security.cert.Certificate;
import java.security.cert.CertificateException;
import java.security.cert.CertificateFactory;
import java.security.cert.X509Certificate;
import java.text.SimpleDateFormat;
import java.util.Collection;

import org.apache.pdfbox.cos.COSDictionary;
import org.apache.pdfbox.cos.COSName;
import org.apache.pdfbox.cos.COSString;
import org.apache.pdfbox.pdmodel.PDDocument;
import org.apache.pdfbox.pdmodel.interactive.digitalsignature.PDSignature;
import org.bouncycastle.cert.X509CertificateHolder;
import org.bouncycastle.cert.jcajce.JcaX509CertificateConverter;
import org.bouncycastle.cms.CMSException;
import org.bouncycastle.cms.CMSProcessable;
import org.bouncycastle.cms.CMSProcessableByteArray;
import org.bouncycastle.cms.CMSSignedData;
import org.bouncycastle.cms.SignerInformation;
import org.bouncycastle.cms.jcajce.JcaSimpleSignerInfoVerifierBuilder;
import org.bouncycastle.operator.OperatorCreationException;
import org.bouncycastle.util.Store;

/**
* This will read a document from the filesystem, decrypt it and do something with the signature.
 *
 * @author Ben Litchfield
 */
public final class ShowSignature
{
private static SimpleDateFormat sdf = new SimpleDateFormat("dd.MM.yyyy HH:mm:ss");

    private ShowSignature()
    {
    }

    /**
     * This is the entry point for the application.
     *
     * @param args The command-line arguments.
     *
     * @throws IOException If there is an error reading the file.
     * @throws CertificateException
     */
public static void main(String[] args) throws IOException, CertificateException,
NoSuchAlgorithmException, InvalidKeyException,
NoSuchProviderException, SignatureException
    {
        ShowSignature show = new ShowSignature();
        show.showSignature( args );
    }

private void showSignature(String[] args) throws IOException, CertificateException,
NoSuchAlgorithmException, InvalidKeyException,
NoSuchProviderException, SignatureException
    {
        if( args.length != 2 )
        {
            usage();
        }
        else
        {
            String password = args[0];
            String infile = args[1];
            PDDocument document = null;
            try
            {
                document = PDDocument.load(new File(infile), password);
                for (PDSignature sig : document.getSignatureDictionaries())
                {
                    COSDictionary sigDict = sig.getCOSObject();
COSString contents = (COSString) sigDict.getDictionaryObject(COSName.CONTENTS);

// download the signed content, described in /ByteRange COSArray:
                    // [offset1 len1 offset2 len2]
                    int[] byteRange = sig.getByteRange();
                    byte[] buf = new byte[byteRange[1] + byteRange[3]];
RandomAccessFile raf = new RandomAccessFile(infile, "r");
                    raf.seek(byteRange[0]);
                    raf.readFully(buf, byteRange[0], byteRange[1]);
                    raf.seek(byteRange[2]);
                    raf.readFully(buf, byteRange[1], byteRange[3]);
                    raf.close();

                    System.out.println("Signature found");
                    System.out.println("Name:     " + sig.getName());
System.out.println("Modified: " + sdf.format(sig.getSignDate().getTime()));
                    String subFilter = sig.getSubFilter();
                    if (subFilter != null)
                    {
                        if (subFilter.equals("adbe.pkcs7.detached"))
                        {
CMSProcessable signedContent = new CMSProcessableByteArray(buf);

                            // inspiration:
                            // http://stackoverflow.com/a/26702631/535646
                            // http://stackoverflow.com/a/9261365/535646
CMSSignedData signedData = new CMSSignedData(signedContent, contents.getBytes()); Store certificatesStore = signedData.getCertificates(); Collection<SignerInformation> signers = signedData.getSignerInfos().getSigners(); SignerInformation signerInformation = signers.iterator().next(); Collection matches = certificatesStore.getMatches(signerInformation.getSID()); X509CertificateHolder certificateHolder = (X509CertificateHolder) matches.iterator().next(); X509Certificate certFromSignedData = new JcaX509CertificateConverter().getCertificate(certificateHolder); System.out.println("certFromSignedData: " + certFromSignedData);
certFromSignedData.checkValidity(sig.getSignDate().getTime());

// CMSVerifierCertificateNotValidException means that the keystore wasn't valid at signing time if (signerInformation.verify(new JcaSimpleSignerInfoVerifierBuilder().build(certFromSignedData)))
                            {
                                System.out.println("Signature verified");
                            }
                            else
                            {
System.out.println("Signature verification failed");
                            }

//TODO check certificate chain, revocation lists, timestamp...
                        }
                        else if (subFilter.equals("adbe.x509.rsa_sha1"))
                        {
                            // PDFBOX-2693.pdf
COSString certString = (COSString) sigDict.getDictionaryObject(
                                    COSName.getPDFName("Cert"));
                            byte[] certData = certString.getBytes();
CertificateFactory factory = CertificateFactory.getInstance("X.509"); ByteArrayInputStream certStream = new ByteArrayInputStream(certData); Collection<? extends Certificate> certs = factory.generateCertificates(certStream);
                            System.out.println("certs=" + certs);

                            //TODO verify signature
                        }
                        else if (subFilter.equals("adbe.pkcs7.sha1"))
                        {
                            // PDFBOX-1452.pdf
COSString certString = (COSString) sigDict.getDictionaryObject(
                                    COSName.CONTENTS);
                            byte[] certData = certString.getBytes();
CertificateFactory factory = CertificateFactory.getInstance("X.509"); ByteArrayInputStream certStream = new ByteArrayInputStream(certData); Collection<? extends Certificate> certs = factory.generateCertificates(certStream);
                            System.out.println("certs=" + certs);

                            //TODO verify signature
                        }
                        else
                        {
System.err.println("Unknown certificate type: " + subFilter);
                        }
                    }
                    else
                    {
throw new IOException("Missing subfilter for cert dictionary");
                    }
                }
            }
            catch (CMSException ex)
            {
                throw new IOException(ex);
            }
            catch (OperatorCreationException ex)
            {
                throw new IOException(ex);
            }
            finally
            {
                if (document != null)
                {
                    document.close();
                }
            }
        }
    }

    /**
     * This will print a usage message.
     */
    private static void usage()
    {
System.err.println( "usage: java " + ShowSignature.class.getName() +
                            "<password> <inputfile>" );
    }
}


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