The Bayes score is not being used in the overall spam score. My MailScanner/SpamAssassin has been working fine. I wanted to wipe out the Bayes files and have them recreate and learn again. I did a rm bayes_* and it removed the files. I restarted MailScanner and the files were recreated and the time stamp is current and the size is slowly building. I can see in the log file "autolearn=spam" and "BAYES_99 1.89" and other Bayes_ scores in the log. I ran sa-learn -dump -D and spamassassin --lint -D and everything looks fine. I have had over 3,000 emails through since I did the rm on the bayes files.
The problem is the Bayes score is not being used in the SpamAssassin scoring. Before the flush I would see the Bayes score first and other the scores under it. How do I get it to start using the Bayes score again? I have retarted MailScanner mulitple times.