Peter Guhl wrote:
Sendmail, Spamass-Milter.

After installing spamass-milter it is set to run as root but it has a
security fallback; it doesn't use root all the time. Maybe that's
causing this behaviour that it writes into /root/.spamassassin but using
the user "spamd".

Likely so. I would set the bayes path explicitly in local.cf (bayes_path option) to a certain location, and ensure that this "fallback" account that Spamass-Milter is using has write privledges there. I'm not familir with Sendmail or it's milters, so this is all I can offer.

- S

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