> > > > I have this working fine. However, once that ....03000100001
> > > > directory exists, all my custom rules (i.e. bayes, regex tests, etc)
> > > > are no longer working and most all spams get through!
> > >
> > > Your custom rules are all located in /etc/mail/spamassassin and not
> > > /usr/share/spamassassin, correct?
> >
> > Yes. These are in /etc/mail/spamassassim/local.cf. There is
> > an sa-update-keys directory there as well which is quite privileged.
>
> In that case there's no reason the custom rules would be disabled or
> ignored. The sa-update directory overrides /usr/share/spamassassin, but
> definitely not /etc/mail/spamassassin.

It SHOULDN'T, it would seem but there are circumstances when it definitely 
does. One is an empty 3.001001 directory. Maybe there should be a symlink 
here to the /etc/mail/spamassassin set?
>
> I'd run with "-LD --lint" and see what's going on.

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