Dan,

> I normally disable bayes, because without proper training it tends to make
> spamassassin less reliable.  But I've got one installation that is
> stubbornly running bayes even though I have disabled it.
>
> I set use_bayes 0 in /etc/mail/spamassassin/local.cf
> I set use_bayes 0 in ~/.spamassassin/user_prefs of the user running
> amavisd-new I can't find any other places I can disable it.

That should suffice, unless you have other .cf files there
where it might be enabled.

> I have verified that all these are set and restarted amavisd-new, but I
> still get bayes_00=-2.599

Check what files SpamAssassin sees during startup:
  amavisd debug-sa

> I also try very hard to kill of AWL, and it is 
> running as well!  How can I disable these features?

use_auto_whitelist 0

(or remove any: loadplugin Mail::SpamAssassin::Plugin::AWL
in your .pre files)

> Does amavisd-new over-ride local.cf for that setting some how?
> I searched the amavisd-new site for clues.
> I'm running spamassassin 3.2.5 and amavisd-new 2.6.2

No, should be all still according to SpamAssassin documentation.
Just remember that everything runs under a dedicated username.

  Mark

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