Just a shot from the hip:

When you run TC from the comand-line, I figure you're using
startup.bat, right? So, maybe there are some env-variables set in this
script (or catalina.bat, classpath.bat), which are not set when
running tomcat.exe as a service?

Forget my comments in case you're running tomcat6.exe from the comand-line

Cheers

Gregor
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