I believe the instruction is incomplete http://platform.xwiki.org/xwiki/bin/view/AdminGuide/Upgrade#HLet27scleanitup I thinks that among other files user should also backup/restore XWiki\WEB-INF\classes\logback.xml if he modified it .... I also think FavIcon is to be preserved. One mast say, it should lie one step in, in Jetty root, but to me i had to have it both in Jetty root and in XWiki root
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