Hi again,

  I have tried upgrading with the most recent release (4.1.3) and seem to
have a successful upgrade.
  However there are issues in the logs (full stack attached [1]), which make
me think there may be issues with the installation in the end.

  So my DB name is "xwiki_utf8_innodb_413".

  1. 2012-07-14 23:56:15,392 [http://localhost/xwiki/bin/view/Main/WebHome]
WARN  o.i.c.InfinispanConfiguration  - ISPN000139: Infinispan configuration
schema could not be resolved locally nor fetched from URL. Local path=null,
schema path=schema/infinispan-config-5.1.xsd, schema
URL=http://www.infinispan.org/schemas/infinispan-config-5.1.xsd
  I believe schema will be created automatically and this error can be
ignored, correct?

  2. 2012-07-14 23:56:18,251 [http://localhost/xwiki/bin/view/Main/WebHome]
WARN  h.R40001XWIKI7540DataMigration - Skipping database [xwiki] because it
uses a custom annotation class. Comments and anotations will remain
separated 
  This one is really weird because my db name is "xwiki_utf8_innodb_413"
(and as you'll see in the logs the rest of upgrade items refer to name
"xwiki_utf8_innodb_413". More over I'd really like to use merged comments
and annotations feature. 
What should I fix in order to merge comments and annotations? 

  3. Then there's a bunch of info messages following next pattern
2012-07-14 23:56:35,897 [http://localhost/xwiki/bin/view/Main/WebHome] INFO 
c.x.x.s.m.liquibase            - Change set
liquibase.xml::R40000-000::sdumitriu failed, this error could be safely
ignored until something worse happens.  Error: Error executing SQL ALTER
TABLE `$table_name$` DROP FOREIGN KEY `$FOREING_KEY_ID$`: Error on rename of
'./xwiki_utf8_innodb_413/$table_name$' to
'./xwiki_utf8_innodb_413/#sql2-dfb-c08f' (errno: 152) 
Where $table_name$ = {xwikiintegers, xwikistrings, xwikifloats,
xwikidoubles, xwikilistitems, xwikidates, xwikilargestrings, xwikilists,
xwikilongs, feeds_feedentrytags, feeds_aggregatorurlgroups}
Even though the message says "safely ignore", I tend not to trust it when I
see words "failed" and "something worse might happen", because in IT it does
happen. 
So again how can I fix this message?

  4. And finally there's a bunch of deprecated methods used in the end:
method [com.xpn.xwiki.api.Util.parseInt] in unknown namespace@68,26 
getter [com.xpn.xwiki.api.Util.getArrayList] in unknown namespace@788,35 
method [com.xpn.xwiki.api.Util.parseInt] in unknown namespace@68,26 
getter [com.xpn.xwiki.api.Util.getArrayList] in unknown namespace@788,35 
Can they be fixed?

  5. Also one more question: after this serious migration, is there a way to
find out that my database and application has a valid state? (I mean some
other way than just start using and find an error after 2-3 weeks of adding
pages, to find out that it wont be able to either downgrade or fix the
issue)


[1] Full upgrade logs attached: 
http://xwiki.475771.n2.nabble.com/file/n7580357/db-migration.log
db-migration.log 

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