Hi, I haven't got a response to this. I am a new to Valgrind. Any pointers would be greatly appreciated.
Thanks. On Sun, Jul 10, 2016 at 6:18 PM, Eqbal <eqbal...@gmail.com> wrote: > I am trying to profile an application with callgrind. The application uses > hadoop's libhdfs api which in turn makes JNI calls to a JVM. This causes a > crash in the JVM. When running normally the application seems to work fine. > > I am running on Centos 6.7 with Valgrind 3.11.0. Java is 1.8 Oracle JDK (I > have also tried open jdk without much luck). > Here is my commandline: > > valgrind -v --tool=callgrind --dump-instr=yes --trace-jump=yes > --trace-children=yes --smc-check=all --collect-jumps=yes > --simulate-cache=yes ./example > > Below are some of the output from valgrind: > > [CodeBlob (0x00000000064d8f50)] > Framesize: 84 > SafepointBlob > Could not load hsdis-amd64.so; library not loadable; PrintAssembly is > disabled > # > # A fatal error has been detected by the Java Runtime Environment: > # > # Internal Error (sharedRuntime.cpp:834), pid=37623, > tid=0x0000000005c138e0 > # fatal error: exception happened outside interpreter, nmethods and > vtable stubs at pc 0x00000000064d9007 > # > # JRE version: Java(TM) SE Runtime Environment (8.0_92-b14) (build > 1.8.0_92-b14) > # Java VM: Java HotSpot(TM) 64-Bit Server VM (25.92-b14 mixed mode > linux-amd64 compressed oops) > # Core dump written. Default location: /home/myuser/libhdfs/core or > core.37623 > # > # An error report file with more information is saved as: > # /home/myuser/libhdfs/hs_err_pid37623.log > ==37623== brk segment overflow in thread #1: can't grow to 0x4900000 > ==37623== brk segment overflow in thread #1: can't grow to 0x49a7000 > # > # If you would like to submit a bug report, please visit: > # http://bugreport.java.com/bugreport/crash.jsp > # > ==37623== > ==37623== Process terminating with default action of signal 6 (SIGABRT): > dumping core > ==37623== at 0x3127032625: raise (in /lib64/libc-2.12.so) > ==37623== by 0x3127033E04: abort (in /lib64/libc-2.12.so) > ==37623== by 0x554A604: os::abort(bool) (in > /usr/java/jdk1.8.0_92/jre/lib/amd64/server/libjvm.so) > ==37623== by 0x56E9A62: VMError::report_and_die() (in > /usr/java/jdk1.8.0_92/jre/lib/amd64/server/libjvm.so) > ==37623== by 0x5127098: report_fatal(char const*, int, char const*) (in > /usr/java/jdk1.8.0_92/jre/lib/amd64/server/libjvm.so) > ==37623== by 0x55E7479: > SharedRuntime::continuation_for_implicit_exception(JavaThread*, unsigned > char*, SharedRuntime::ImplicitExceptionKind) (in /usr/java/jdk1.8.0_92 > /jre/lib/amd64/server/libjvm.so) > ==37623== by 0x5550169: JVM_handle_linux_signal (in > /usr/java/jdk1.8.0_92/jre/lib/amd64/server/libjvm.so) > ==37623== by 0x55465C2: signalHandler(int, siginfo*, void*) (in > /usr/java/jdk1.8.0_92/jre/lib/amd64/server/libjvm.so) > ==37623== by 0x312703269F: ??? (in /lib64/libc-2.12.so) > ==37623== by 0x64D9006: ??? > ==37623== by 0x44: ??? > ==37623== by 0x649A03F: ??? > > ---------- > Here is the stack trace from jvm error log: > > Current thread (0x0000000004022800): JavaThread "main" [_thread_in_Java, > id=37623, stack(0x0000000ffef01000,0x0000000fff001000)] > > Stack: [0x0000000ffef01000,0x0000000fff001000], sp=0x0000000ffeff1ae0, > free space=962k > Native frames: (J=compiled Java code, j=interpreted, Vv=VM code, C=native > code) > V [libjvm.so+0xabd65a] VMError::report_and_die()+0x2ba > V [libjvm.so+0x4fb099] report_fatal(char const*, int, char const*)+0x59 > V [libjvm.so+0x9bb47a] > SharedRuntime::continuation_for_implicit_exception(JavaThread*, unsigned > char*, SharedRuntime::ImplicitExceptionKind)+0x33a > V [libjvm.so+0x92416a] JVM_handle_linux_signal+0x48a > V [libjvm.so+0x91a5c3] signalHandler(int, siginfo*, void*)+0x43 > C [libc.so.6+0x326a0] > C 0x0000000000000045 > j java.net.URLClassLoader$1.run()Ljava/lang/Object;+1 > v ~StubRoutines::call_stub > V [libjvm.so+0x68e746] JavaCalls::call_helper(JavaValue*, methodHandle*, > JavaCallArguments*, Thread*)+0x1056 > V [libjvm.so+0x7275bc] JVM_DoPrivileged+0x27c > j > > java.security.AccessController.doPrivileged(Ljava/security/PrivilegedExceptionAction;Ljava/security/AccessControlContext;)Ljava/lang/Object;+0 > j > java.net.URLClassLoader.findClass(Ljava/lang/String;)Ljava/lang/Class;+13 > J 327 C1 > java.lang.ClassLoader.loadClass(Ljava/lang/String;Z)Ljava/lang/Class; (122 > bytes) @ 0x000000000663a8e4 [0x0000000006639f80+0x964] > j > > sun.misc.Launcher$AppClassLoader.loadClass(Ljava/lang/String;Z)Ljava/lang/Class;+81 > j java.lang.ClassLoader.loadClass(Ljava/lang/String;)Ljava/lang/Class;+3 > v ~StubRoutines::call_stub > V [libjvm.so+0x68e746] JavaCalls::call_helper(JavaValue*, methodHandle*, > JavaCallArguments*, Thread*)+0x1056 > V [libjvm.so+0x68ec51] JavaCalls::call_virtual(JavaValue*, KlassHandle, > Symbol*, Symbol*, JavaCallArguments*, Thread*)+0x321 > V [libjvm.so+0x68f0a6] JavaCalls::call_virtual(JavaValue*, Handle, > KlassHandle, Symbol*, Symbol*, Handle, Thread*)+0x56 > V [libjvm.so+0xa349a0] SystemDictionary::load_instance_class(Symbol*, > Handle, Thread*)+0x3f0 > V [libjvm.so+0xa3388c] > SystemDictionary::resolve_instance_class_or_null(Symbol*, Handle, Handle, > Thread*)+0x7cc > V [libjvm.so+0xa34dc3] SystemDictionary::resolve_or_fail(Symbol*, > Handle, Handle, bool, Thread*)+0x33 > V [libjvm.so+0x70cd6e] find_class_from_class_loader(JNIEnv_*, Symbol*, > unsigned char, Handle, Handle, unsigned char, Thread*)+0x3e > V [libjvm.so+0x7142b1] JVM_FindClassFromCaller+0x2e1 > C [libjava.so+0xe2d0] Java_java_lang_Class_forName0+0x130 > j > > java.lang.Class.forName0(Ljava/lang/String;ZLjava/lang/ClassLoader;Ljava/lang/Class;)Ljava/lang/Class;+0 > j > > java.lang.Class.forName(Ljava/lang/String;ZLjava/lang/ClassLoader;)Ljava/lang/Class;+49 > j > > com.sun.beans.finder.ClassFinder.findClass(Ljava/lang/String;Ljava/lang/ClassLoader;)Ljava/lang/Class;+11 > j > > com.sun.beans.finder.InstanceFinder.instantiate(Ljava/lang/Class;Ljava/lang/String;)Ljava/lang/Object;+13 > j > > com.sun.beans.finder.InstanceFinder.find(Ljava/lang/Class;)Ljava/lang/Object;+34 > j > > java.beans.Introspector.findExplicitBeanInfo(Ljava/lang/Class;)Ljava/beans/BeanInfo;+7 > j java.beans.Introspector.<init>(Ljava/lang/Class;Ljava/lang/Class;I)V+121 > j > > java.beans.Introspector.getBeanInfo(Ljava/lang/Class;)Ljava/beans/BeanInfo;+60 > j > > java.beans.Introspector.getBeanInfo(Ljava/lang/Class;Ljava/lang/Class;I)Ljava/beans/BeanInfo;+10 > j java.beans.Introspector.<init>(Ljava/lang/Class;Ljava/lang/Class;I)V+157 > j > > java.beans.Introspector.getBeanInfo(Ljava/lang/Class;)Ljava/beans/BeanInfo;+60 > j > > java.beans.Introspector.getBeanInfo(Ljava/lang/Class;Ljava/lang/Class;I)Ljava/beans/BeanInfo;+10 > j java.beans.Introspector.<init>(Ljava/lang/Class;Ljava/lang/Class;I)V+157 > j > > java.beans.Introspector.getBeanInfo(Ljava/lang/Class;)Ljava/beans/BeanInfo;+60 > j org.apache.log4j.config.PropertySetter.introspect()V+7 > j > > org.apache.log4j.config.PropertySetter.getPropertyDescriptor(Ljava/lang/String;)Ljava/beans/PropertyDescriptor;+8 > j > > org.apache.log4j.config.PropertySetter.setProperties(Ljava/util/Properties;Ljava/lang/String;)V+113 > j > > org.apache.log4j.config.PropertySetter.setProperties(Ljava/lang/Object;Ljava/util/Properties;Ljava/lang/String;)V+10 > j > > org.apache.log4j.PropertyConfigurator.parseAppender(Ljava/util/Properties;Ljava/lang/String;)Lorg/apache/log4j/Appender;+694 > j > > org.apache.log4j.PropertyConfigurator.parseCategory(Ljava/util/Properties;Lorg/apache/log4j/Logger;Ljava/lang/String;Ljava/lang/String;Ljava/lang/String;)V+280 > j > > org.apache.log4j.PropertyConfigurator.configureRootCategory(Ljava/util/Properties;Lorg/apache/log4j/spi/LoggerRepository;)V+63 > j > > org.apache.log4j.PropertyConfigurator.doConfigure(Ljava/util/Properties;Lorg/apache/log4j/spi/LoggerRepository;)V+134 > j > > org.apache.log4j.PropertyConfigurator.doConfigure(Ljava/net/URL;Lorg/apache/log4j/spi/LoggerRepository;)V+246 > j > > org.apache.log4j.helpers.OptionConverter.selectAndConfigure(Ljava/net/URL;Ljava/lang/String;Lorg/apache/log4j/spi/LoggerRepository;)V+129 > j org.apache.log4j.LogManager.<clinit>()V+156 > v ~StubRoutines::call_stub > V [libjvm.so+0x68e746] JavaCalls::call_helper(JavaValue*, methodHandle*, > JavaCallArguments*, Thread*)+0x1056 > V [libjvm.so+0x640807] > InstanceKlass::call_class_initializer_impl(instanceKlassHandle, > Thread*)+0xd7 > V [libjvm.so+0x642cfc] > InstanceKlass::initialize_impl(instanceKlassHandle, Thread*)+0x1ac > V [libjvm.so+0x6430c1] InstanceKlass::initialize(Thread*)+0x41 > V [libjvm.so+0x7f7df6] LinkResolver::resolve_static_call(CallInfo&, > KlassHandle&, Symbol*, Symbol*, KlassHandle, bool, bool, Thread*)+0x246 > V [libjvm.so+0x7f807f] LinkResolver::resolve_invokestatic(CallInfo&, > constantPoolHandle, int, Thread*)+0x23f > V [libjvm.so+0x7f9131] LinkResolver::resolve_invoke(CallInfo&, Handle, > constantPoolHandle, int, Bytecodes::Code, Thread*)+0x4f1 > V [libjvm.so+0x687cc2] InterpreterRuntime::resolve_invoke(JavaThread*, > Bytecodes::Code)+0x1b2 > j > > org.apache.log4j.Logger.getLogger(Ljava/lang/String;)Lorg/apache/log4j/Logger;+1 > j > > org.apache.commons.logging.impl.Log4JLogger.getLogger()Lorg/apache/log4j/Logger;+27 > j > org.apache.commons.logging.impl.Log4JLogger.<init>(Ljava/lang/String;)V+16 > v ~StubRoutines::call_stub > V [libjvm.so+0x68e746] JavaCalls::call_helper(JavaValue*, methodHandle*, > JavaCallArguments*, Thread*)+0x1056 > V [libjvm.so+0x995797] Reflection::invoke(instanceKlassHandle, > methodHandle, Handle, bool, objArrayHandle, BasicType, objArrayHandle, > bool, Thread*)+0x5d7 > V [libjvm.so+0x996413] Reflection::invoke_constructor(oopDesc*, > objArrayHandle, Thread*)+0x313 > V [libjvm.so+0x71cf5a] JVM_NewInstanceFromConstructor+0x10a > j > > sun.reflect.NativeConstructorAccessorImpl.newInstance0(Ljava/lang/reflect/Constructor;[Ljava/lang/Object;)Ljava/lang/Object;+0 > j > > sun.reflect.NativeConstructorAccessorImpl.newInstance([Ljava/lang/Object;)Ljava/lang/Object;+85 > j > > sun.reflect.DelegatingConstructorAccessorImpl.newInstance([Ljava/lang/Object;)Ljava/lang/Object;+5 > j > > java.lang.reflect.Constructor.newInstance([Ljava/lang/Object;)Ljava/lang/Object;+79 > j > > org.apache.commons.logging.impl.LogFactoryImpl.createLogFromClass(Ljava/lang/String;Ljava/lang/String;Z)Lorg/apache/commons/logging/Log;+397 > j > > org.apache.commons.logging.impl.LogFactoryImpl.discoverLogImplementation(Ljava/lang/String;)Lorg/apache/commons/logging/Log;+187 > j > > org.apache.commons.logging.impl.LogFactoryImpl.newInstance(Ljava/lang/String;)Lorg/apache/commons/logging/Log;+9 > j > > org.apache.commons.logging.impl.LogFactoryImpl.getInstance(Ljava/lang/String;)Lorg/apache/commons/logging/Log;+18 > j > > org.apache.commons.logging.impl.LogFactoryImpl.getInstance(Ljava/lang/Class;)Lorg/apache/commons/logging/Log;+5 > j > > org.apache.commons.logging.LogFactory.getLog(Ljava/lang/Class;)Lorg/apache/commons/logging/Log;+4 > j org.apache.hadoop.fs.FileSystem.<clinit>()V+3 > v ~StubRoutines::call_stub > V [libjvm.so+0x68e746] JavaCalls::call_helper(JavaValue*, methodHandle*, > JavaCallArguments*, Thread*)+0x1056 > V [libjvm.so+0x640807] > InstanceKlass::call_class_initializer_impl(instanceKlassHandle, > Thread*)+0xd7 > V [libjvm.so+0x642cfc] > InstanceKlass::initialize_impl(instanceKlassHandle, Thread*)+0x1ac > V [libjvm.so+0x6430c1] InstanceKlass::initialize(Thread*)+0x41 > V [libjvm.so+0x70cdab] find_class_from_class_loader(JNIEnv_*, Symbol*, > unsigned char, Handle, Handle, unsigned char, Thread*)+0x7b > V [libjvm.so+0x6e4874] jni_FindClass+0x424 > C [libhdfs.so.0.0.0+0x364c] globalClassReference+0xac > ---- > > Any pointers on how I can make this work? >
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