Hi Ward

Are you sure this worked with a previous version and if so which version.
Might the size of the result set increased since then ?

You can increased the available memory pool size by increasing the following
params in the [Parameters] section of your virtuoso.ini file:

NumberOfBuffers = 300000
MaxDirtyBuffers = 240000
MaxCheckpointRemap = 300000

As detailed at:

http://docs.openlinksw.com/virtuoso/dbadm.html#ini_Parameters

I would suggest doubling them to start off with and increase accordingly
until the query runs.

Best Regards,
Hugh Williams
Professional Services
OpenLink Software
Web: http://www.openlinksw.com
Universal Data Access & Data Integration Technology Providers


On 21/02/2008 14:33, "Ward Blondé" <wa...@psb.ugent.be> wrote:

> 
> 
> Hello,
> 
> In VOS 5.0.5 I tried the following query:
> 
> prefix rdf:<http://www.w3.org/1999/02/22-rdf-syntax-ns#>
> prefix 
> uri001:<http://www.cellcycleontology.org/ontology/rdf/CCO#CCO_C0000043>
> prefix uri002:<http://www.cellcycleontology.org/ontology/rdf/CCO#Definition>
> prefix 
> uri003:<http://www.cellcycleontology.org/ontology/rdf/CCO#CCO_C0000446>
> prefix uri004:<http://www.cellcycleontology.org/ontology/rdf/CCO#Definition>
> prefix 
> uri005:<http://www.cellcycleontology.org/ontology/rdf/CCO#CCO_C0000505>
> prefix uri006:<http://www.cellcycleontology.org/ontology/rdf/CCO#Definition>
> prefix 
> uri007:<http://www.cellcycleontology.org/ontology/rdf/CCO#CCO_C0000793>
> prefix uri008:<http://www.w3.org/2000/01/rdf-schema#comment>
> prefix 
> uri009:<http://www.cellcycleontology.org/ontology/rdf/CCO#CCO_C0001883>
> prefix uri010:<http://www.cellcycleontology.org/ontology/rdf/CCO#Definition>
> prefix 
> uri011:<http://www.cellcycleontology.org/ontology/rdf/CCO#CCO_C0001980>
> prefix uri012:<http://www.cellcycleontology.org/ontology/rdf/CCO#Definition>
> prefix 
> uri013:<http://www.cellcycleontology.org/ontology/rdf/CCO#CCO_C0002040>
> prefix uri014:<http://www.cellcycleontology.org/ontology/rdf/CCO#Definition>
> prefix 
> uri015:<http://www.cellcycleontology.org/ontology/rdf/CCO#CCO_P0000103>
> prefix uri016:<http://www.cellcycleontology.org/ontology/rdf/CCO#Definition>
> prefix 
> uri017:<http://www.cellcycleontology.org/ontology/rdf/CCO#CCO_P0000103>
> prefix uri018:<http://www.cellcycleontology.org/ontology/rdf/CCO#synonym>
> prefix 
> uri019:<http://www.cellcycleontology.org/ontology/rdf/CCO#CCO_P0000103>
> prefix uri020:<http://www.cellcycleontology.org/ontology/rdf/CCO#synonym>
> select *
> from <http://www.cellcycleontology.org/ontology/rdf/CCO>
> where {
> optional{uri001: rdf:type ?type001}.
> optional{uri002: rdf:type ?type002}.
> optional{uri003: rdf:type ?type003}.
> optional{uri004: rdf:type ?type004}.
> optional{uri005: rdf:type ?type005}.
> optional{uri006: rdf:type ?type006}.
> optional{uri007: rdf:type ?type007}.
> optional{uri008: rdf:type ?type008}.
> optional{uri009: rdf:type ?type009}.
> optional{uri010: rdf:type ?type010}.
> optional{uri011: rdf:type ?type011}.
> optional{uri012: rdf:type ?type012}.
> optional{uri013: rdf:type ?type013}.
> optional{uri014: rdf:type ?type014}.
> optional{uri015: rdf:type ?type015}.
> optional{uri016: rdf:type ?type016}.
> optional{uri017: rdf:type ?type017}.
> optional{uri018: rdf:type ?type018}.
> optional{uri019: rdf:type ?type019}.
> optional{uri020: rdf:type ?type020}.
> }
> 
> The aim is to post-process the answer of any other random query
> programmatically, and to look what are the types of the uri's. But I get
> this error-message:
> ..... Error SQ200: The memory pool size 10495344 reached the limit
> 10485760 bytes, try to increase the MaxMemPoolSize ini setting.
> 
> Is it because I used to many prefixes? I thought this query worked
> before the change to 5.0.5. It still seems to work with less uri's.
> 
> thanks,
> 
> Ward
> 
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