On 2/18/14 10:07 AM, QUERALT ROSINACH, NÚRIA wrote:
Dear all,I would like to found out the reason why the following query works in a virtuoso v6.1.6 instance but it does not work in one of virtuoso v7.0.1:PREFIX atlasterms: <http://rdf.ebi.ac.uk/terms/atlas/>SELECT DISTINCT ?gdassoc ?associationType ?disease ?gene ?snp ?uniprot ?expressionValue WHERE{ ?gdassoc rdf:type sio:SIO_001123 . ?gdassoc rdf:type ?associationType . ?gdassoc sio:SIO_000628 ?disease,?gene . ?disease rdf:type ncit:C7057 . ?gene rdf:type ncit:C16612 . ?gene sio:SIO_010078 ?protein . ?protein owl:sameAs ?uniprot . ?gdassoc sio:SIO_000001 ?snp . ?snp rdf:type ncit:C18279 . # Get the expression for the proteins from GXA SERVICE <http://www.ebi.ac.uk/rdf/services/atlas/sparql> { ?probe atlasterms:dbXref ?uniprot . ?value atlasterms:isMeasurementOf ?probe . ?value atlasterms:pValue ?pvalue . ?value rdfs:label ?expressionValue . } } LIMIT 100The error that come up is one of the 'Time out transaction'. Let me know what information you need. Many thanks in advance.best, nuria -- ******************************************************************** Núria Queralt Rosinach Research Programme on Biomedical Informatics (GRIB) Department of Experimental and Health Sciences Universitat Pompeu Fabra IMIM (Hospital del Mar Medical Research Institute) C/Dr. Aiguader 88, 08003 Barcelona, Spain Tel.: +34 93 316 0536 E-mail: nuria.quer...@upf.edu <mailto:nuria.quer...@upf.edu> http://ibi.imim.es/ ********************************************************************
Why not try this query from <http://linkeddata.uriburner.com/sparql> and then share the SPARQL Results URL?
That's a quicker way to get to the bottom of the issue. -- Regards, Kingsley Idehen Founder & CEO OpenLink Software Company Web: http://www.openlinksw.com Personal Weblog: http://www.openlinksw.com/blog/~kidehen Twitter Profile: https://twitter.com/kidehen Google+ Profile: https://plus.google.com/+KingsleyIdehen/about LinkedIn Profile: http://www.linkedin.com/in/kidehen
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