Looking more at the scripts, I see that this is a limitation of VTK, rather 
than VMTK.  I might just end up placing elements at common bounding locations 
in both models.

Ben



On Apr 26, 2012, at 6:00 PM, Berkowitz, Benjamin M wrote:

> Luca,
> 
> vmtkimagereslice worked very well to get the two images to the same 
> dimensions.  However, the origin is still in a different position because the 
> two surface models were difference sizes when clipped.  Is there an easy 
> workaround to keep the origin consistent, or do I need to use another method 
> such as registration?
> 
> Thank you,
> Ben
> 
> 
> On Apr 23, 2012, at 4:15 AM, Luca Antiga wrote:
> 
>> Hi Ben,
>> there is, although it could be more direct:
>> 
>> 1. make sure the two initial surfaces are "close" enough to begin with
>> 2. generate img1.vti and img2.vti with vmtksurfacemodeller
>> 3. resample img2.vti on the image grid of img1.vti using vmtkimagereslice
>> 
>> vmtkimagereslice -ifile img2.vti -rfile img2.vti -ofile img2_on_1.vti
>> 
>> At this point img1 and img2_on_1 are defined on the exact same grid. This
>> is quite convenient because you can for instance merge them with 
>> vmtkimagecompose,
>> etc.
>> 
>> Hope this helps
>> 
>> 
>> Luca
>> 
>> 
>> On Apr 19, 2012, at 8:24 PM, Berkowitz, Benjamin M wrote:
>> 
>>> Is there a way to keep the origin consistent between two image stacks 
>>> created from vmtksurfacemodeller?
>>> 
>>> Thanks,
>>> Ben Berkowitz
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