Dear Luca and all, I was looking for a way in python to calculate the centreline of my 3D surfaces and could not find anything wrapped in python (only c++ algorithms), therefore I am a new vmtk user.
My datasets consist of several 3D ultrasound volumes in metafile: each with one .mha (example attached) and one .raw. Using vtk I first split each volume in its slices: in the example .mha with DimSize = 272 256 208, I split my volume in 208 frames. Thereafter, in vtk again, I just read these frames (whole volume) with the vtk.vtkImageReader2(). The function that does this is attached and working perfectly. Question: how can read my volume (.mha and .raw) files to vmtk? I have not been able to do it so far.. With vtk, I obtain a surface which I get with vtk.vtkSurfaceReconstructionFilter() and then vtk.vtkContourFilter(). Question: can vmtk be run in the same python file of (along with) vtk? If yes, how can I use the vmtkcenterlines and probably the vmtksurfacereader to calculate the centre line of my models? my models are simple, they are like big elipses (always closed in a convex set), so calculating the centreline should be simple. IF I cannot run vmtk along with vtk, what do you advise me to do, so I can extract the centreline with vmtk? Your help would be really appreciated! Many thanks. Best regards, Joao Domingos
us3D.py
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26fr1.mha
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