Hi Anouk,
I'm not really sure about what's not working here, the output from vmtk
you attached is not self-explanatory, unfortunately.
Just a note: you shouldn't enclose option values in quotes ('profileidlist')
but just use values unquoted
vmtksurfacereader -ifile H:\Cath_recon_4(1)_10(1)_SC.stl -f stl --pipe
vmtkcenterlines -endpoints 1 -seedselector profileidlist -sourceids 0
-targetids 1 --pipe vmtkcenterlinegeometry -ofile
H:\Cath_recon_4(1)_10(1)_SC_output_testing.dat
Can you try sending more of the text output? Also, does the pipe hang
or just exits successfully without generating a file?
Thanks
Luca
On Apr 3, 2013, at 2:15 PM, Anouk Post wrote:
> Hi Luca,
>
> You were right, I used idlist instead of profileidlist.
>
> Unfortunately, it didn't work, I don't get an output file.
>
> INPUT:
>
> vmtksurfacereader -ifile H:\Cath_recon_4(1)_10(1)_SC.stl -f "stl" --pipe
> vmtkcenterlines -endpoints 1 -seedselector 'profileidlist' -sourceids 0
> -targetids 1 --pipe vmtkcenterlinegeometry -ofile
> H:\Cath_recon_4(1)_10(1)_SC_output_testing.dat
>
> OUTPUT:
> Image of output is attached (could not copy the text).
>
> Do you know why it's not working?
>
> Thanks!
>
> Best,
>
> Anouk
>
>
>
>
>
>
>
> On 29 March 2013 13:28, Luca Antiga <luca.ant...@orobix.com> wrote:
> Hi Anouk,
> this is what I'd expect from -seedselector idlist, not -seedselector
> profileidlist.
> Are you sure it was the latter and not the former?
>
> Luca
>
>
> On Mar 29, 2013, at 2:07 PM, Anouk Post wrote:
>
>> Hi Luca,
>>
>> I already tried that and it didn't work. It gave me only a partial
>> reconstruction of the centerline (a very short one).
>>
>> Best,
>>
>> Anouk
>>
>> On 29 March 2013 13:04, Luca Antiga <luca.ant...@orobix.com> wrote:
>> Hi Anouk,
>> try with
>> -seedselector profileidlist -sourceids 0 -targetids 1
>>
>> (hoping you have a recent enough version of vmtk)
>>
>> Best,
>>
>>
>> Luca
>>
>>
>> On Mar 25, 2013, at 7:36 PM, Anouk Post wrote:
>>
>>> Dear VMTK users,
>>>
>>> I am using VMTK centerline to calculate the centerline of an stl file as
>>> follows:
>>>
>>> vmtksurfacereader -ifile /Users/.../Phantom_Best_Catheter_now.stl -f "stl"
>>> --pipe vmtkcenterlines -endpoints 1 -seedselector openprofiles --pipe
>>> vmtkcenterlinegeometry -ofile
>>> /Users/.../Phantom_Best_Catheter_now_output.dat
>>>
>>>
>>>
>>> For all the different input files I use, the seedselector option always
>>> leads to me pressing 'q' '0' '1' and then it works. So I close the viewer,
>>> and I think I set the source id as 0 and the target id as 1.
>>>
>>> Is there a way to make this an automatic process so I don't have to type q,
>>> 0, 1 each time? I've tried using seedselector idlist but I'm not sure how
>>> to use it (it does not give me the right answer when I use -sourceids 0
>>> -targetids 1.
>>>
>>> Does anyone know a way to do this?
>>>
>>>
>>> Thanks in advance!
>>>
>>>
>>> Best wishes,
>>>
>>>
>>> Anouk
>>>
>>> ------------------------------------------------------------------------------
>>> Everyone hates slow websites. So do we.
>>> Make your web apps faster with AppDynamics
>>> Download AppDynamics Lite for free today:
>>> http://p.sf.net/sfu/appdyn_d2d_mar_______________________________________________
>>> vmtk-users mailing list
>>> vmtk-users@lists.sourceforge.net
>>> https://lists.sourceforge.net/lists/listinfo/vmtk-users
>>
>>
>>
>>
>> --
>> Best Wishes,
>>
>> Anouk
>> ------------------------------------------------------------------------------
>> Own the Future-Intel(R) Level Up Game Demo Contest 2013
>> Rise to greatness in Intel's independent game demo contest. Compete
>> for recognition, cash, and the chance to get your game on Steam.
>> $5K grand prize plus 10 genre and skill prizes. Submit your demo
>> by 6/6/13.
>> http://altfarm.mediaplex.com/ad/ck/12124-176961-30367-2_______________________________________________
>>
>> vmtk-users mailing list
>> vmtk-users@lists.sourceforge.net
>> https://lists.sourceforge.net/lists/listinfo/vmtk-users
>
>
>
>
> --
> Best Wishes,
>
> Anouk
> <vmtk.jpg>------------------------------------------------------------------------------
> Minimize network downtime and maximize team effectiveness.
> Reduce network management and security costs.Learn how to hire
> the most talented Cisco Certified professionals. Visit the
> Employer Resources Portal
> http://www.cisco.com/web/learning/employer_resources/index.html_______________________________________________
> vmtk-users mailing list
> vmtk-users@lists.sourceforge.net
> https://lists.sourceforge.net/lists/listinfo/vmtk-users
------------------------------------------------------------------------------
Minimize network downtime and maximize team effectiveness.
Reduce network management and security costs.Learn how to hire
the most talented Cisco Certified professionals. Visit the
Employer Resources Portal
http://www.cisco.com/web/learning/employer_resources/index.html
_______________________________________________
vmtk-users mailing list
vmtk-users@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/vmtk-users
