Hi Hamed,
what I meant is that you should use the full path to every file you read or
write:
vmtkimagereader -f dicom -d C:/Users/Hamed/Downloads/Compressed/br1 --pipe
vmtkimagevoiselector -ofile C:/Users/Hamed/image_volume_voi.vti
Also, don't start a pipe with --pipe, like
--pipe vmtkmarchingcubes -ifile image_volume_voi.vti -l 300.0 -ofile
mc_surface.vtp --pipe vmtksurfaceviewer
Omit the first --pipe, like :
vmtkmarchingcubes -ifile C:/Users/Hamed/image_volume_voi.vti -l 300.0 -ofile
C:/Users/Hamed/mc_surface.vtp --pipe vmtksurfaceviewer
(note that I included the full paths to the files).
Hope this helps
Luca
PS: please keep all messages on the mailing list.
On May 4, 2013, at 7:42 PM, Hamed Rezaie wrote:
> dear Luca thanks for your advice but I should that I could not understand
> what you mean.
> I have no problem for reading my image and making VOI by the below command
> "vmtkimagereader -f dicom -d C:/Users/Hamed/Downloads/Compressed/br1 --pipe
> vmtkimagevoiselector -ofile image_volume_voi.vti" (picture 1)
> and pressing Run all and after that pressing i and select the VOI and
> pressing q but after that when I use the below command
> " --pipe vmtkmarchingcubes -ifile image_volume_voi.vti -l 300.0 -ofile
> mc_surface.vtp --pipe vmtksurfaceviewer" (picture 2)
> and Run selection nothing happen and when I use all command together and Run
> all
> the result is like picture 1 and after pressing i and q and again q the
> result is like picture 3.
> I am confused and could not do anything please help me
> kind regards
> Hamed
> From: Luca Antiga <luca.ant...@orobix.com>
> To: Hamed Rezaie <hamedrezai...@yahoo.com>
> Cc: "vmtk-users@lists.sourceforge.net" <vmtk-users@lists.sourceforge.net>
> Sent: Wednesday, May 1, 2013 6:10 AM
> Subject: Re: [vmtk-users] VMTK
>
> Hello Hamed,
> it looks like you don't have write permissions at the path where you are
> trying to write the files and read them afterwards.
> Try to specify a full path at all -ifile and -ofile options, like -ofile
> C:\Users\Hamed\image_volume_voi.vti
> Best,
>
> Luca
>
> On 30/apr/2013, at 13:43, Hamed Rezaie <hamedrezai...@yahoo.com> wrote:
>
>> hello to every body
>> I need your favor
>> when I want to extract surface from DICOM images by the below command
>> "vmtkimagereader -f dicom -d C:/Users/Hamed/Downloads/Compressed/br1 --pipe
>> vmtkmarchingcubes -ifile image_volume_voi.vti -l 300.0 -ofile mc_surface.vtp
>> --pipe vmtksurfaceviewer"
>> an empty rendering windows and an error windows like the picture which is
>> attached is appeared.
>> I need to extract the geometry of COW but I could not progress is there any
>> one who can help me.
>> <error VMTK.png>
>> ------------------------------------------------------------------------------
>> Introducing AppDynamics Lite, a free troubleshooting tool for Java/.NET
>> Get 100% visibility into your production application - at no cost.
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>> _______________________________________________
>> vmtk-users mailing list
>> vmtk-users@lists.sourceforge.net
>> https://lists.sourceforge.net/lists/listinfo/vmtk-users
>
>
> <1.png><2.png><3.png>
------------------------------------------------------------------------------
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Get 100% visibility into your production application - at no cost.
Code-level diagnostics for performance bottlenecks with <2% overhead
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