Hi Evan,
it's an environment variables issue and yes, it's currently not nice to run
vmtkApps in Windows, sorry about this.
What you can do is create a patchanterinterpolatecenterlines.bat file (the name
is irrelevant, the important is the .bat extension) with the following content:
set VMTK_DIR=C:\"Program Files (x86)"\vmtk
set PATH=%VMTK_DIR%bin;%VMTK_DIR%lib\InsightToolkit;%VMTK_DIR%lib\Python;%PATH%
set
PYTHONPATH=%VMTK_DIR%lib\site-packages;%VMTK_DIR%lib\vtk-5.6;%VMTK_DIR%lib\vmtk
cd %VMTK_DIR%
python patchanterinterpolatecenterlines.py
Then double click on the .bat file. Let me know if this works or what error
messages it produces.
We'll have to think about a nicer solution than this in the future.
Luca
On May 2, 2013, at 10:04 PM, Evan Kao wrote:
> Hi Luca,
>
> You can move the files (you just need the files in
> vmtkApps/CerebralAneurysms/ParentVesselReconstruction) into any directory.
> The you should invoke the scripts at the command line, but in order to do
> this you need Windows to "see" python and the vmtk modules.
> What are the directories where Python and vmtk are installed on our machine?
>
> Both vmtk and Python are in their default directories (Python was installed
> through vmtk):
>
> C:\Program Files (x86)\vmtk
> C:\Python27
>
> It seems I was able to open patchanterinterpolatecenterlin
> es.py in the command line interface, but it doesn't see the vmtk modules
> ("Import Error: no module named vtk"). How can I remedy this?
>
> Thanks,
> Evan Kao
>
>
> On Wed, May 1, 2013 at 5:30 AM, Luca Antiga <luca.ant...@orobix.com> wrote:
> Hi Evan,
>
> On Apr 26, 2013, at 8:39 AM, Evan Kao wrote:
>
>> Hi Luca,
>>
>> I had some questions on using the Python scripts (having little Python
>> experience):
>>
>> 1. Into which directory should I move the files (in Windows; files obtained
>> from the source file zip)?
>
> You can move the files (you just need the files in
> vmtkApps/CerebralAneurysms/ParentVesselReconstruction) into any directory.
> The you should invoke the scripts at the command line, but in order to do
> this you need Windows to "see" python and the vmtk modules.
> What are the directories where Python and vmtk are installed on our machine?
>
>> 2. I was confused by the form of the command "python
>> patchandinterpolatecenterline.py directoryPath id1 lateral" from the
>> tutorial. Are we supposed to call these functions from the command
>> line/Python shell or can we still do it inside vmtk?
>
> They are meant to be run outside of vmtk, at the command line.
>
> Luca
>
>> Thanks for the help,
>> Evan Kao
>>
>>
>>
>> On Mon, Apr 22, 2013 at 11:03 AM, Evan Kao <tos...@gmail.com> wrote:
>> Hi Luca,
>>
>> Thanks for the info.
>>
>>
>> On Mon, Apr 22, 2013 at 7:01 AM, Luca Antiga <luca.ant...@orobix.com> wrote:
>> Hello Evan,
>> at the present stage you can download them from github.com/vmtk/vmtk
>>
>> If you don't use git, just get the source code zip at
>>
>> https://github.com/vmtk/vmtk/archive/master.zip
>>
>> and unpack. vmtkApps contains the Python scripts you're looking for.
>>
>> Best,
>>
>> Luca
>>
>>
>> On Apr 20, 2013, at 12:09 AM, Evan Kao wrote:
>>
>> > Hello vmtk-users,
>> >
>> > I'm interested in going through the parent vessel reconstruction tutorial
>> > but I don't think I have the relevant Python scripts. The tutorial says
>> > the files are in the vmtkApps folder, but I couldn't find anything like
>> > that. Are they usually included in the installation? Where could I find
>> > these scripts (and possibly other vmtkApps)?
>> >
>> > Thank you,
>> > Evan Kao
>> > ------------------------------------------------------------------------------
>> > Precog is a next-generation analytics platform capable of advanced
>> > analytics on semi-structured data. The platform includes APIs for building
>> > apps and a phenomenal toolset for data science. Developers can use
>> > our toolset for easy data analysis & visualization. Get a free account!
>> > http://www2.precog.com/precogplatform/slashdotnewsletter_______________________________________________
>> > vmtk-users mailing list
>> > vmtk-users@lists.sourceforge.net
>> > https://lists.sourceforge.net/lists/listinfo/vmtk-users
>>
>>
>>
>
>
> ------------------------------------------------------------------------------
> Get 100% visibility into Java/.NET code with AppDynamics Lite
> It's a free troubleshooting tool designed for production
> Get down to code-level detail for bottlenecks, with <2% overhead.
> Download for free and get started troubleshooting in minutes.
> http://p.sf.net/sfu/appdyn_d2d_ap2_______________________________________________
> vmtk-users mailing list
> vmtk-users@lists.sourceforge.net
> https://lists.sourceforge.net/lists/listinfo/vmtk-users
------------------------------------------------------------------------------
Introducing AppDynamics Lite, a free troubleshooting tool for Java/.NET
Get 100% visibility into your production application - at no cost.
Code-level diagnostics for performance bottlenecks with <2% overhead
Download for free and get started troubleshooting in minutes.
http://p.sf.net/sfu/appdyn_d2d_ap1
_______________________________________________
vmtk-users mailing list
vmtk-users@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/vmtk-users
