Hi Maria, skull stripping is out of vmtk's current scope. You can find very effective skull stripping methods in - 3DSlicer (www.slicer.org, Foreground masking (BRAINS) module) - BRAINSTools (https://github.com/BRAINSia/BRAINSTools) - FreeSurfer (http://www.freesurfer.net/) - SPM (http://www.fil.ion.ucl.ac.uk/spm/)
Hope this helps Luca On Aug 19, 2013, at 1:14 PM, Maria Grigorieva wrote: > Hi all, I am working on brain MR, Ct and angiography image segmentation. > My task is to extract brain segment, and remove the skull. > How do I strip the skull in VMTK? Are there any modules for this? > > Thank you! > > > Maria Grigoryeva > > ------------------------------------------------------------------------------ > Get 100% visibility into Java/.NET code with AppDynamics Lite! > It's a free troubleshooting tool designed for production. > Get down to code-level detail for bottlenecks, with <2% overhead. > Download for free and get started troubleshooting in minutes. > http://pubads.g.doubleclick.net/gampad/clk?id=48897031&iu=/4140/ostg.clktrk > _______________________________________________ > vmtk-users mailing list > vmtk-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/vmtk-users ------------------------------------------------------------------------------ Get 100% visibility into Java/.NET code with AppDynamics Lite! It's a free troubleshooting tool designed for production. Get down to code-level detail for bottlenecks, with <2% overhead. Download for free and get started troubleshooting in minutes. http://pubads.g.doubleclick.net/gampad/clk?id=48897031&iu=/4140/ostg.clktrk _______________________________________________ vmtk-users mailing list vmtk-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/vmtk-users
