Problem solved, I only change #include <malloc.h> for #include </usr/include/malloc/malloc.h> in gmxtrajectoryreader.cc
Thanks for your help. Marc-André Dubois Le 2011-08-22 à 20:20, Marc-André Dubois a écrit : > Thanks a lot, I will check this tomorrow. > > Marc-André Dubois > Université de Montréal > Montréal, Québec, Canada > 1-514-659-6305 > [email protected] > > Le 2011-08-22 à 18:24, Christoph Junghans <[email protected]> a écrit : > >> Ah, osx is not my specialty (maybe Sikandar can help). >> >> I guess, first you have to find malloc.h. >> Maybe it is in /usr/include/malloc, otherwise you can use find to find it >> with: >> $find / -name malloc.h >> Once you have the path to malloc.h just add an option like >> -DCMAKE_INCLUDE_PATH=/dir/of/malloc/ to the cmake (or build.sh) >> command. >> >> Cheers, >> >> Christoph >> >> 2011/8/23 Marc-André Dubois <[email protected]>: >>> Thanks Christoph. I'm running osx, libc should be already installed… >>> >>> Marc >>> >>> Le 2011-08-22 à 17:42, Christoph Junghans a écrit : >>> >>>> Hi Marc, >>>> >>>> malloc.h is usually a part of the libc, so possibly you have to >>>> install the libc's development package. >>>> Under linux that is usually called glibc-dev or glibc-devel. >>>> >>>> Cheers, >>>> >>>> Christoph >>>> >>>> >>>> 2011/8/22 Marc-André Dubois <[email protected]>: >>>>> Hi guys, >>>>> I tried to install VOTCA. First of all, I tried to compile >>>>> the different dependencies after what I installed VOTCA Tools. At this >>>>> point, everything works like a charm. I tried to install VOTCA CSG, but >>>>> it fails at a certain point writing: >>>>> >>>>> [ 49%] Building CXX object >>>>> src/libcsg/CMakeFiles/votca_csg.dir/modules/io/gmxtrajectoryreader.cc.o >>>>> /Users/ma/VOTCA/src/csg/src/libcsg/modules/io/gmxtrajectoryreader.cc:18:20: >>>>> error: malloc.h: No such file or directory >>>>> make[2]: *** >>>>> [src/libcsg/CMakeFiles/votca_csg.dir/modules/io/gmxtrajectoryreader.cc.o] >>>>> Error 1 >>>>> make[1]: *** [src/libcsg/CMakeFiles/votca_csg.dir/all] Error 2 >>>>> make: *** [all] Error 2 >>>>> >>>>> I think the problem concerns my GROMACS repertory which is not the >>>>> default one. Isn't? I tried multiple time to redo my procedure following >>>>> your website, but I am not able to go further this step. Thanks for your >>>>> help, >>>>> >>>>> Marc-André Dubois >>>>> Université de Montréal, >>>>> Québec, Canada >>>>> [email protected] >>>> >>>> -- >>>> You received this message because you are subscribed to the Google Groups >>>> "votca" group. >>>> To post to this group, send email to [email protected]. >>>> To unsubscribe from this group, send email to >>>> [email protected]. >>>> For more options, visit this group at >>>> http://groups.google.com/group/votca?hl=en. >>>> >>> >>> -- >>> You received this message because you are subscribed to the Google Groups >>> "votca" group. >>> To post to this group, send email to [email protected]. >>> To unsubscribe from this group, send email to >>> [email protected]. >>> For more options, visit this group at >>> http://groups.google.com/group/votca?hl=en. >>> >>> >> >> >> >> -- >> Dr. Christoph Junghans >> Votca Core Developer >> >> Web: http://www.votca.org >> >> -- >> You received this message because you are subscribed to the Google Groups >> "votca" group. >> To post to this group, send email to [email protected]. >> To unsubscribe from this group, send email to >> [email protected]. >> For more options, visit this group at >> http://groups.google.com/group/votca?hl=en. >> > > -- > You received this message because you are subscribed to the Google Groups > "votca" group. > To post to this group, send email to [email protected]. > To unsubscribe from this group, send email to > [email protected]. > For more options, visit this group at > http://groups.google.com/group/votca?hl=en. > -- You received this message because you are subscribed to the Google Groups "votca" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/votca?hl=en.
