This is issue #120 (https://code.google.com/p/votca/issues/detail?id=120) now.
Am 20. Oktober 2011 09:46 schrieb Sikandar Mashayak <symasha...@gmail.com>: > Hey Christoph, > > I agree with you printing gromacs options and help may be very useful , but > not for all the same iterations. > > I guess, one way keep inverse.log file cleaner is to direct gromacs output > to another file say gromacs.log. Also, to avoid rapid growth of gromacs.log, > we can chose to print gromacs output only at certain iterations, say every > ith iteration, and for all other iterations just use -quiet > dump 2>&1 > option to run gromacs commands and direct its output to dump file, and in > the end delete the dump file. > > what do you think? > > thanks > sikandar > > On Thu, Oct 20, 2011 at 3:49 AM, Christoph Junghans <jungh...@votca.org> > wrote: >> >> hi, >> >> yes & no. >> >> On the one hand the default of all gromacs tools is to print their >> help, whenever you call them, so one can see all the options/ input >> files used. I think this is very useful. >> On the other hand after 500 times the same iteration the log file is >> flooded with always the same help message, which is useless. >> >> But, as it is possible to change some options in the mdp/xml file >> after some iterations, one can never know if the gromacs output is >> still useful. >> >> So, I don't see a clear solution here. One could send the output of >> the gromacs tool to a different log file, but still that file would >> grow rapidly. Possibly one could add markers like "#BEGIN/END GROMACS >> OUTPUT" to the logfile and so that one can filter them later with sed >> if required. >> (sed '/#BEGIN GROMACS/,/#END GROMACS/d' ) >> >> Comment? Suggestions? >> >> Cheers, >> >> Christoph >> >> Am 19. Oktober 2011 05:04 schrieb Sikandar Mashayak >> <symasha...@gmail.com>: >> > Hi >> > >> > I notice that when gromacs commands are executed using inverse script >> > with >> > logging enabled, gromacs command output such as its help, available >> > options, >> > run time etc. everything is written into the log file. Is there any way >> > that >> > I could avoid it so that log file would look much more clean? >> > >> > thanks >> > sikandar >> > >> > -- >> > You received this message because you are subscribed to the Google >> > Groups >> > "votca" group. >> > To post to this group, send email to votca@googlegroups.com. >> > To unsubscribe from this group, send email to >> > votca+unsubscr...@googlegroups.com. >> > For more options, visit this group at >> > http://groups.google.com/group/votca?hl=en. >> > >> >> >> >> -- >> Christoph Junghans >> Votca Core Developer >> >> Web: http://www.votca.org >> >> -- >> You received this message because you are subscribed to the Google Groups >> "votca" group. >> To post to this group, send email to votca@googlegroups.com. >> To unsubscribe from this group, send email to >> votca+unsubscr...@googlegroups.com. >> For more options, visit this group at >> http://groups.google.com/group/votca?hl=en. >> > > -- > You received this message because you are subscribed to the Google Groups > "votca" group. > To post to this group, send email to votca@googlegroups.com. > To unsubscribe from this group, send email to > votca+unsubscr...@googlegroups.com. > For more options, visit this group at > http://groups.google.com/group/votca?hl=en. > -- Christoph Junghans Votca Core Developer Web: http://www.votca.org -- You received this message because you are subscribed to the Google Groups "votca" group. To post to this group, send email to votca@googlegroups.com. To unsubscribe from this group, send email to votca+unsubscr...@googlegroups.com. For more options, visit this group at http://groups.google.com/group/votca?hl=en.
