On 07/08/12 19:31, Christoph Junghans wrote:
2012/8/7 ms <[email protected]>:
I cannot reproduce this. The target is resampled at the beginning of
every iteration step, hence changing the target on-the-fly does not
work.

Oh OK. It seems that if I erase the step_000 and step_001 directories indeed it works.

- most importantly, it ignores the <grompp.bin> I gave to it. I added:

     <gromacs>
       <grompp.bin>grompp_d</grompp.bin>
       <mdrun.command>mpirun mdrun_d</mdrun.command>
Well it should be:
      <gromacs>
        <grompp>
            <bin>grompp_d</bin>
          </grompp>
        <mdrun>
          <command>mpirun mdrun_d</command>
       </mdrun>

The "."s in the manual are because latex does not support this deep
itemize environments.
We should add a comment about that!

Ouch, thanks -it was not clear at all!
Now it seems to recognize everything.

Thanks,
Massimo

--
Massimo Sandal, Ph.D.
http://devicerandom.org

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