Hi,I just tried to see if VOTCA works with the new GROMACS 4.6-beta2. After having successfully compiled GROMACS 4.6-beta2 I re-downloaded and re-compiled VOTCA from scratch as:
export prefix=/home/massimo/gromacs/votca
mkdir -p ${prefix}/src
cd src
wget http://votca.googlecode.com/hg/build.sh
chmod +x build.sh
and then:
./build.sh
-DGROMACS_INCLUDE_DIR=/home/massimo/gromacs/gromacs-4.6b1/gromacs-4.6-beta2/exec-single/include
-DGROMACS_LIBRARY=/home/massimo/gromacs/gromacs-4.6b1/gromacs-4.6-beta2/exec-single/lib/libgmx_4.6b2.so
--prefix ~/gromacs/votca/votca tools csg
and it fails with/home/massimo/gromacs/gromacs-4.6b1/gromacs-4.6-beta2/exec-single/include/gromacs/types/ifunc.h:42:24: fatal error: visibility.h: File o directory non esistente
compilation terminated. (a bit more context below). The same identical procedure worked for an older GROMACS-4.6 from Git. Any hint? thanks, Massimo --- [ 3%] Built target gmx_print_version Current revision is 1234c5028e9dCurrent revision is 1234c5028e9d Current revision is 1234c5028e9d Current revision is 1234c5028e9d Current revision is 1234c5028e9d [ 3%] [ 3%] [ 3%] [ 3%] [ 3%] Built target help2t2t Built target csg_call Built target hgversion Built target multi_g_rdf Built target csg_inverse [ 5%] Generating gmx_libs_version.h Scanning dependencies of target votca_csg[ 7%] [ 9%] [ 10%] [ 12%] [ 14%] [ 16%] [ 18%] [ 20%] [ 21%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/openbox.cc.o
Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/molecule.cc.oBuilding CXX object src/libcsg/CMakeFiles/votca_csg.dir/boundarycondition.cc.o
Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/nematicorder.cc.oBuilding CXX object src/libcsg/CMakeFiles/votca_csg.dir/trajectoryreader.cc.o
Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/topologyreader.cc.o Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/map.cc.o Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/triclinicbox.cc.o Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/beadlist.cc.oIn file included from /home/massimo/gromacs/gromacs-4.6b1/gromacs-4.6-beta2/exec-single/include/gromacs/typedefs.h:69:0, from /home/massimo/gromacs/gromacs-4.6b1/gromacs-4.6-beta2/exec-single/include/gromacs/statutil.h:44, from /home/massimo/gromacs/votca/src/csg/src/libcsg/modules/io/gmxtrajectoryreader.h:38, from /home/massimo/gromacs/votca/src/csg/src/libcsg/trajectoryreader.cc:27: /home/massimo/gromacs/gromacs-4.6b1/gromacs-4.6-beta2/exec-single/include/gromacs/types/ifunc.h:42:24: fatal error: visibility.h: File o directory non esistente
compilation terminated.[ 23%] [ 25%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/topologymap.cc.o
Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/imcio.cc.o [ 27%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/version.cc.o[ 29%] [ 30%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/exclusionlist.cc.o
Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/cgengine.cc.omake[2]: *** [src/libcsg/CMakeFiles/votca_csg.dir/trajectoryreader.cc.o] Errore 1
make[2]: *** Attesa per i processi non terminati.... make[1]: *** [src/libcsg/CMakeFiles/votca_csg.dir/all] Errore 2 make: *** [all] Errore 2 massimo@francy:~/gromacs/votca/src$ -- Massimo Sandal, Ph.D. http://devicerandom.org -- You received this message because you are subscribed to the Google Groups "votca" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/votca?hl=en.
