On Thu, Sep 19, 2013 at 10:07 AM, Scott W Sides <[email protected]>wrote:

> Indeed it does. However there is no such file in the tutorial.
>

Dear Scott,

The tpr file can be generated using the grompp executable of gromacs. It
takes the input as structure (pdb/gro) file, topology file (topol.top) and
index.ndx file. These files are available in the propane/ibi tutorial

Chandan

Research Fellow
National Chemical Laboratory
India

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