As you said I ran the command you mentioned. The output was : -bash:
/usr/include/boost/boost-1.51.0/include: No such file or directory
So I changed the boost path to this one
: /usr/local/boost/boost-1.51.0/include/ which is a directiry for the boost.
After running again the following command : ./build.sh --prefix ${prefix}
gromacs -DBoost_INCLUDE_DIR=/usr/local/boost/boost-1.51.0/include/ --dev
tools csg
I got the following error
CMakeFiles/votca_property.dir/votca_property.cc.o: In function
`_ZN5boost15program_options16validation_errorC2ENS1_6kind_tERKSsS4_i.clone.2':
votca_property.cc:(.text+0x11a): undefined reference to
`boost::program_options::validation_error::get_template(boost::program_options::validation_error::kind_t)'
votca_property.cc:(.text+0x12e): undefined reference to
`boost::program_options::error_with_option_name::error_with_option_name(std::basic_string<char,
std::char_traits<char>, std::allocator<char> > const&,
std::basic_string<char, std::char_traits<char>, std::allocator<char> >
const&, std::basic_string<char, std::char_traits<char>,
std::allocator<char> > const&, int)'
CMakeFiles/votca_property.dir/votca_property.cc.o: In function
`boost::program_options::error_with_option_name::~error_with_option_name()':
votca_property.cc:(.text._ZN5boost15program_options22error_with_option_nameD2Ev[_ZN5boost15program_options22error_with_option_nameD5Ev]+0x19):
undefined reference to `vtable for
boost::program_options::error_with_option_name'
CMakeFiles/votca_property.dir/votca_property.cc.o: In function
`boost::program_options::validation_error::validation_error(boost::program_options::validation_error
const&)':
votca_property.cc:(.text._ZN5boost15program_options16validation_errorC2ERKS1_[_ZN5boost15program_options16validation_errorC5ERKS1_]+0x3a):
undefined reference to `vtable for
boost::program_options::error_with_option_name'
CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ZTVN5boost15program_options16validation_errorE[vtable
for boost::program_options::validation_error]+0x20): undefined reference to
`boost::program_options::error_with_option_name::what() const'
CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ZTVN5boost15program_options16validation_errorE[vtable
for boost::program_options::validation_error]+0x30): undefined reference to
`boost::program_options::error_with_option_name::substitute_placeholders(std::basic_string<char,
std::char_traits<char>, std::allocator<char> > const&) const'
CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ZTIN5boost15program_options16validation_errorE[typeinfo
for boost::program_options::validation_error]+0x10): undefined reference to
`typeinfo for boost::program_options::error_with_option_name'
CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ZTVN5boost16exception_detail19error_info_injectorINS_15program_options16validation_errorEEE[vtable
for
boost::exception_detail::error_info_injector<boost::program_options::validation_error>]+0x20):
undefined reference to
`boost::program_options::error_with_option_name::what() const'
CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ZTVN5boost16exception_detail19error_info_injectorINS_15program_options16validation_errorEEE[vtable
for
boost::exception_detail::error_info_injector<boost::program_options::validation_error>]+0x30):
undefined reference to
`boost::program_options::error_with_option_name::substitute_placeholders(std::basic_string<char,
std::char_traits<char>, std::allocator<char> > const&) const'
CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ZTVN5boost16exception_detail10clone_implINS0_19error_info_injectorINS_15program_options16validation_errorEEEEE[vtable
for
boost::exception_detail::clone_impl<boost::exception_detail::error_info_injector<boost::program_options::validation_error>
>]+0x28): undefined reference to
`boost::program_options::error_with_option_name::what() const'
CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ZTVN5boost16exception_detail10clone_implINS0_19error_info_injectorINS_15program_options16validation_errorEEEEE[vtable
for
boost::exception_detail::clone_impl<boost::exception_detail::error_info_injector<boost::program_options::validation_error>
>]+0x38): undefined reference to
`boost::program_options::error_with_option_name::substitute_placeholders(std::basic_string<char,
std::char_traits<char>, std::allocator<char> > const&) const'
CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ZTVN5boost16exception_detail19error_info_injectorINS_15program_options20invalid_option_valueEEE[vtable
for
boost::exception_detail::error_info_injector<boost::program_options::invalid_option_value>]+0x20):
undefined reference to
`boost::program_options::error_with_option_name::what() const'
CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ZTVN5boost16exception_detail19error_info_injectorINS_15program_options20invalid_option_valueEEE[vtable
for
boost::exception_detail::error_info_injector<boost::program_options::invalid_option_value>]+0x30):
undefined reference to
`boost::program_options::error_with_option_name::substitute_placeholders(std::basic_string<char,
std::char_traits<char>, std::allocator<char> > const&) const'
CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ZTVN5boost15program_options20invalid_option_valueE[vtable
for boost::program_options::invalid_option_value]+0x20): undefined
reference to `boost::program_options::error_with_option_name::what() const'
CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ZTVN5boost15program_options20invalid_option_valueE[vtable
for boost::program_options::invalid_option_value]+0x30): undefined
reference to
`boost::program_options::error_with_option_name::substitute_placeholders(std::basic_string<char,
std::char_traits<char>, std::allocator<char> > const&) const'
CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ZTVN5boost16exception_detail10clone_implINS0_19error_info_injectorINS_15program_options20invalid_option_valueEEEEE[vtable
for
boost::exception_detail::clone_impl<boost::exception_detail::error_info_injector<boost::program_options::invalid_option_value>
>]+0x28): undefined reference to
`boost::program_options::error_with_option_name::what() const'
CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ZTVN5boost16exception_detail10clone_implINS0_19error_info_injectorINS_15program_options20invalid_option_valueEEEEE[vtable
for
boost::exception_detail::clone_impl<boost::exception_detail::error_info_injector<boost::program_options::invalid_option_value>
>]+0x38): undefined reference to
`boost::program_options::error_with_option_name::substitute_placeholders(std::basic_string<char,
std::char_traits<char>, std::allocator<char> > const&) const'
../libtools/libvotca_tools.so.3: undefined reference to
`boost::program_options::options_description::options_description(std::basic_string<char,
std::char_traits<char>, std::allocator<char> > const&, unsigned int,
unsigned int)'
../libtools/libvotca_tools.so.3: undefined reference to
`boost::system::system_category()'
../libtools/libvotca_tools.so.3: undefined reference to
`boost::program_options::detail::cmdline::get_canonical_option_prefix()'
../libtools/libvotca_tools.so.3: undefined reference to
`boost::system::generic_category()'
../libtools/libvotca_tools.so.3: undefined reference to
`boost::filesystem::path::operator/=(boost::filesystem::path const&)'
../libtools/libvotca_tools.so.3: undefined reference to
`boost::program_options::options_description::options_description(unsigned
int, unsigned int)'
collect2: ld returned 1 exit status
make[2]: *** [src/tools/votca_property] Error 1
make[1]: *** [src/tools/CMakeFiles/votca_property.dir/all] Error 2
make: *** [all] Error 2
Best Regards,
Hossein
On Wednesday, February 12, 2014 7:12:49 PM UTC-6, Christoph Junghans wrote:
>
> 2014-02-12 17:49 GMT-07:00 Hossein Motevaselian
> <[email protected]<javascript:>>:
>
> > Dear VOTCA community,
> > I am trying to install VOTCA on our campus cluster using ./build.sh. I
> have
> > tried to install VOTCA before , but I did not get this error:
> >
> > CMake Error at CMakeModules/FindBoost.cmake:524 (FILE):
> > file Internal CMake error when trying to open file:
> > /usr/include/boost/boost-1.51.0/include/boost/version.hpp for reading.
> > Call Stack (most recent call first):
> > CMakeLists.txt:64 (find_package)
> >
> >
> > CMake Error at CMakeModules/FindBoost.cmake:537 (MATH):
> > math cannot parse the expression: " / 100000": syntax error,
> unexpected
> > exp_DIVIDE, expecting exp_OPENPARENT or exp_NUMBER (2)
> > Call Stack (most recent call first):
> > CMakeLists.txt:64 (find_package)
> >
> >
> > CMake Error at CMakeModules/FindBoost.cmake:538 (MATH):
> > math cannot parse the expression: " / 100 % 1000": syntax error,
> > unexpected
> > exp_DIVIDE, expecting exp_OPENPARENT or exp_NUMBER (2)
> > Call Stack (most recent call first):
> > CMakeLists.txt:64 (find_package)
> >
> >
> > CMake Error at CMakeModules/FindBoost.cmake:539 (MATH):
> > math cannot parse the expression: " % 100": syntax error, unexpected
> > exp_MOD, expecting exp_OPENPARENT or exp_NUMBER (2)
> > Call Stack (most recent call first):
> > CMakeLists.txt:64 (find_package)
> >
> >
> > -- Boost version: ..
> > -- Found the following Boost libraries:
> > -- program_options
> > CMake Warning at CMakeModules/FindGROMACS.cmake:100 (message):
> > You are using /home/motevas2/application/VOTCA/lib/libgmx.so, but
> > GROMACS_PKG was libgmx_d. There seems to be a mismatch in precision,
> > single vs double, no ending vs. _d. If this is not the case ignore
> this
> > warning otherwise enable set GROMACS_PKG correctly using
> > -DGROMACS_PKG_OVERWRITE=lib(gmx|gromacs)(_d).
> > Call Stack (most recent call first):
> > src/libcsg/CMakeLists.txt:12 (find_package)
> >
> >
> > -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE)
> > -- Configuring incomplete, errors occurred!
> >
> > I have loaded the appropriate modules such as mercurial, git and boost
> > libraries.
> > I am using the following commands line after getting ./build.sh script :
> > ./build.sh --prefix ${prefix} gromacs --dev tools csg
> > I have also tried this , it did not work : ./build.sh --prefix ${prefix}
> > gromacs -DBUILD_MANPAGES=off
> > -DBoost_INCLUDE_DIR=/usr/include/boost/boost-1.51.0/include --dev tools
> csg
> >
> > I would really appreciate it if you can help me with this.
> Can you post the output of:
> $ ls /usr/include/boost/boost-1.51.0/include
> and
> $ ls /usr/include/boost/boost-1.51.0/include/boost/
>
> >
> > Thank you much
> > Hossein
> >
> > --
> > You received this message because you are subscribed to the Google
> Groups
> > "votca" group.
> > To unsubscribe from this group and stop receiving emails from it, send
> an
> > email to [email protected] <javascript:>.
> > To post to this group, send email to [email protected]<javascript:>.
>
> > Visit this group at http://groups.google.com/group/votca.
> > For more options, visit https://groups.google.com/groups/opt_out.
>
>
>
> --
> Christoph Junghans
> Web: http://www.compphys.de
>
--
You received this message because you are subscribed to the Google Groups
"votca" group.
To unsubscribe from this group and stop receiving emails from it, send an email
to [email protected].
To post to this group, send email to [email protected].
Visit this group at http://groups.google.com/group/votca.
For more options, visit https://groups.google.com/groups/opt_out.
