2014-03-04 14:47 GMT-07:00 Sikandar Mashayak <[email protected]>: > Hi Chandan > > I am not very sure why, may be Christoph would know better. > > I am guessing the error is because of missing manpages for > csg_dlptopol_manpage.dir. Can you try with the flag -DBUILD_MANPAGES=OFF Yeah, -DBUILD_MANPAGES=OFF will help, but there seems to be a bug in "csg_dlptopol --help".
Chandan, can you try if build --clean-out and see if it helps? > > -- > Sikandar > > > On Tue, Mar 4, 2014 at 9:43 AM, Chandan Choudhury <[email protected]> wrote: >> >> Dear votca users, >> >> I downloaded the recent votca csg, tools for the repo using hg. >> Installing of votca tools was easy. >> While when I try to install csg it gives the following error : The output >> of installation is attached. >> >> *** Error in `./csg_dlptopol': double free or corruption (out): >> 0x0000000001be3430 *** >> ======= Backtrace: ========= >> /lib64/libc.so.6(+0x7afc6)[0x2b948bdaafc6] >> /lib64/libc.so.6(+0x7bd43)[0x2b948bdabd43] >> >> /opt/apps/votca/13-dev/lib/libvotca_csg.so.3(_ZN5votca3csg14CsgApplicationD1Ev+0x62)[0x2b948a3c7dd2] >> ./csg_dlptopol(main+0x3e)[0x40f09e] >> /lib64/libc.so.6(__libc_start_main+0xf5)[0x2b948bd51a15] >> ./csg_dlptopol[0x40f121] >> ======= Memory map: ======== >> 00400000-00422000 r-xp 00000000 08:03 533529 >> /opt/untar/votca/csg/csg/cmake-build/src/tools/csg_dlptopol >> 00621000-00622000 r--p 00021000 08:03 533529 >> /opt/untar/votca/csg/csg/cmake-build/src/tools/csg_dlptopol >> 00622000-00623000 rw-p 00022000 08:03 533529 >> /opt/untar/votca/csg/csg/cmake-build/src/tools/csg_dlptopol >> 01be0000-01c01000 rw-p 00000000 00:00 0 >> [heap] >> 2b948a155000-2b948a176000 r-xp 00000000 08:02 398915 >> /lib64/ld-2.17.so >> 2b948a176000-2b948a177000 rw-p 00000000 00:00 0 >> 2b948a376000-2b948a377000 r--p 00021000 08:02 398915 >> /lib64/ld-2.17.so >> 2b948a377000-2b948a378000 rw-p 00022000 08:02 398915 >> /lib64/ld-2.17.so >> 2b948a378000-2b948a379000 rw-p 00000000 00:00 0 >> 2b948a379000-2b948a3f6000 r-xp 00000000 08:03 531644 >> /opt/apps/votca/13-dev/lib/libvotca_csg.so.3 >> 2b948a3f6000-2b948a5f6000 ---p 0007d000 08:03 531644 >> /opt/apps/votca/13-dev/lib/libvotca_csg.so.3 >> 2b948a5f6000-2b948a5f9000 r--p 0007d000 08:03 531644 >> /opt/apps/votca/13-dev/lib/libvotca_csg.so.3 >> 2b948a5f9000-2b948a5fa000 rw-p 00080000 08:03 531644 >> /opt/apps/votca/13-dev/lib/libvotca_csg.so.3 >> 2b948a5fa000-2b948a5fb000 rw-p 00000000 00:00 0 >> 2b948a5fb000-2b948a660000 r-xp 00000000 08:03 531583 >> /opt/apps/votca/13-dev/lib/libvotca_tools.so.3 >> 2b948a660000-2b948a85f000 ---p 00065000 08:03 531583 >> /opt/apps/votca/13-dev/lib/libvotca_tools.so.3 >> 2b948a85f000-2b948a861000 r--p 00064000 08:03 531583 >> /opt/apps/votca/13-dev/lib/libvotca_tools.so.3 >> 2b948a861000-2b948a863000 rw-p 00066000 08:03 531583 >> /opt/apps/votca/13-dev/lib/libvotca_tools.so.3 >> 2b948a863000-2b948ae56000 r-xp 00000000 08:03 530013 >> /opt/apps/gmx/463/single/lib/libgmx.so.8 >> 2b948ae56000-2b948b055000 ---p 005f3000 08:03 530013 >> /opt/apps/gmx/463/single/lib/libgmx.so.8 >> 2b948b055000-2b948b05b000 r--p 005f2000 08:03 530013 >> /opt/apps/gmx/463/single/lib/libgmx.so.8 >> 2b948b05b000-2b948b070000 rw-p 005f8000 08:03 530013 >> /opt/apps/gmx/463/single/lib/libgmx.so.8 >> 2b948b070000-2b948b073000 rw-p 00000000 00:00 0 >> 2b948b096000-2b948b0f4000 r-xp 00000000 08:02 403169 >> /usr/lib64/libboost_program_options.so.1.49.0 >> 2b948b0f4000-2b948b2f4000 ---p 0005e000 08:02 403169 >> /usr/lib64/libboost_program_options.so.1.49.0 >> 2b948b2f4000-2b948b2f7000 r--p 0005e000 08:02 403169 >> /usr/lib64/libboost_program_options.so.1.49.0 >> 2b948b2f7000-2b948b2f8000 rw-p 00061000 08:02 403169 >> /usr/lib64/libboost_program_options.so.1.49.0 >> 2b948b2f8000-2b948b2f9000 rw-p 00000000 00:00 0 >> 2b948b2f9000-2b948b310000 r-xp 00000000 08:02 398447 >> /lib64/libpthread-2.17.so >> 2b948b310000-2b948b50f000 ---p 00017000 08:02 398447 >> /lib64/libpthread-2.17.so >> 2b948b50f000-2b948b510000 r--p 00016000 08:02 398447 >> /lib64/libpthread-2.17.so >> 2b948b510000-2b948b511000 rw-p 00017000 08:02 398447 >> /lib64/libpthread-2.17.so >> 2b948b511000-2b948b515000 rw-p 00000000 00:00 0 >> 2b948b515000-2b948b5fd000 r-xp 00000000 08:02 395903 >> /usr/lib64/libstdc++.so.6.0.17 >> 2b948b5fd000-2b948b7fc000 ---p 000e8000 08:02 395903 >> /usr/lib64/libstdc++.so.6.0.17 >> 2b948b7fc000-2b948b804000 r--p 000e7000 08:02 395903 >> /usr/lib64/libstdc++.so.6.0.17 >> 2b948b804000-2b948b806000 rw-p 000ef000 08:02 395903 >> /usr/lib64/libstdc++.so.6.0.17 >> 2b948b806000-2b948b81b000 rw-p 00000000 00:00 0 >> 2b948b81b000-2b948b918000 r-xp 00000000 08:02 398438 >> /lib64/libm-2.17.so >> 2b948b918000-2b948bb17000 ---p 000fd000 08:02 398438 >> /lib64/libm-2.17.so >> 2b948bb17000-2b948bb18000 r--p 000fc000 08:02 398438 >> /lib64/libm-2.17.so >> 2b948bb18000-2b948bb19000 rw-p 000fd000 08:02 398438 >> /lib64/libm-2.17.so >> 2b948bb19000-2b948bb1a000 rw-p 00000000 00:00 0 >> 2b948bb1a000-2b948bb2f000 r-xp 00000000 08:02 391692 >> /lib64/libgcc_s.so.1 >> 2b948bb2f000-2b948bd2e000 ---p 00015000 08:02 391692 >> /lib64/libgcc_s.so.1 >> 2b948bd2e000-2b948bd2f000 r--p 00014000 08:02 391692 >> /lib64/libgcc_s.so.1 >> 2b948bd2f000-2b948bd30000 rw-p 00015000 08:02 391692 >> /lib64/libgcc_s.so.1 >> 2b948bd30000-2b948bed4000 r-xp 00000000 08:02 398439 >> /lib64/libc-2.17.so >> 2b948bed4000-2b948c0d4000 ---p 001a4000 08:02 398439 >> /lib64/libc-2.17.so >> 2b948c0d4000-2b948c0d8000 r--p 001a4000 08:02 398439 >> /lib64/libc-2.17.so >> 2b948c0d8000-2b948c0da000 rw-p 001a8000 08:02 398439 >> /lib64/libc-2.17.so >> 2b948c0da000-2b948c0de000 rw-p 00000000 00:00 0 >> 2b948c0de000-2b948c0fd000 r-xp 00000000 08:02 403162 >> /usr/lib64/libboost_filesystem.so.1.49.0 >> 2b948c0fd000-2b948c2fc000 ---p 0001f000 08:02 403162 >> /usr/lib64/libboost_filesystem.so.1.49.0 >> 2b948c2fc000-2b948c2fd000 r--p 0001e000 08:02 403162 >> /usr/lib64/libboost_filesystem.so.1.49.0 >> 2b948c2fd000-2b948c2fe000 rw-p 0001f000 08:02 403162 >> /usr/lib64/libboost_filesystem.so.1.49.0 >> 2b948c2fe000-2b948c2ff000 rw-p 00000000 00:00 0 >> 2b948c2ff000-2b948c518000 r-xp 00000000 08:02 403004 >> /usr/lib64/libgsl.so.0.16.0 >> 2b948c518000-2b948c717000 ---p 00219000 08:02 403004 >> /usr/lib64/libgsl.so.0.16.0 >> 2b948c717000-2b948c71a000 r--p 00218000 08:02 403004 >> /usr/lib64/libgsl.so.0.16.0 >> 2b948c71a000-2b948c72a000 rw-p 0021b000 08:02 403004 >> /usr/lib64/libgsl.so.0.16.0 >> 2b948c72a000-2b948c72b000 rw-p 00000000 00:00 0 >> 2b948c72b000-2b948c767000 r-xp 00000000 08:02 403006 >> /usr/lib64/libgslcblas.so.0.0.0 >> 2b948c767000-2b948c966000 ---p 0003c000 08:02 403006 >> /usr/lib64/libgslcblas.so.0.0.0 >> 2b948c966000-2b948c967000 r--p 0003b000 08:02 403006 >> /usr/lib64/libgslcblas.so.0.0.0 >> 2b948c967000-2b948c968000 rw-p 0003c000 08:02 403006 >> /usr/lib64/libgslcblas.so.0.0.0 >> 2b948c968000-2b948ca35000 r-xp 00000000 08:02 397424 >> /usr/lib64/libsqlite3.so.0.8.6 >> 2b948ca35000-2b948cc34000 ---p 000cd000 08:02 397424 >> /usr/lib64/libsqlite3.so.0.8.6 >> 2b948cc34000-2b948cc36000 r--p 000cc000 08:02 397424 >> /usr/lib64/libsqlite3.so.0.8.6 >> 2b948cc36000-2b948cc39000 rw-p 000ce000 08:02 397424 >> /usr/lib64/libsqlite3.so.0.8.6 >> 2b948cc39000-2b948cc3a000 rw-p 00000000 00:00 0 >> 2b948cc3a000-2b948ce16000 r-xp 00000000 08:02 398405 >> /usr/lib64/libfftw3.so.3.3.2 >> 2b948ce16000-2b948d015000 ---p 001dc000 08:02 398405 >> /usr/lib64/libfftw3.so.3.3.2 >> 2b948d015000-2b948d026000 r--p 001db000 08:02 398405 >> /usr/lib64/libfftw3.so.3.3.2 >> 2b948d026000-2b948d027000 rw-p 001ec000 08:02 398405 >> /usr/lib64/libfftw3.so.3.3.2 >> 2b948d027000-2b948d04d000 r-xp 00000000 08:02 397446 >> /usr/lib64/libexpat.so.1.6.0 >> 2b948d04d000-2b948d24d000 ---p 00026000 08:02 397446 >> /usr/lib64/libexpat.so.1.6.0 >> 2b948d24d000-2b948d24f000 r--p 00026000 08:02 397446 >> /usr/lib64/libexpat.so.1.6.0 >> 2b948d24f000-2b948d250000 rw-p 00028000 08:02 397446 >> /usr/lib64/libexpat.so.1.6.0 >> 2b948d250000-2b948d251000 rw-p 00000000 00:00 0 >> 2b948d251000-2b948d3b9000 r-xp 00000000 08:03 131385 >> /opt/apps/fftw/3.3.3/single/lib64/libfftw3f.so.3.3.2 >> 2b948d3b9000-2b948d5b9000 ---p 00168000 08:03 131385 >> /opt/apps/fftw/3.3.3/single/lib64/libfftw3f.so.3.3.2 >> 2b948d5b9000-2b948d5c5000 r--p 00168000 08:03 131385 >> /opt/apps/fftw/3.3.3/single/lib64/libfftw3f.so.3.3.2 >> 2b948d5c5000-2b948d5c6000 rw-p 00174000 08:03 131385 >> /opt/apps/fftw/3.3.3/single/lib64/libfftw3f.so.3.3.2 >> 2b948d5c6000-2b948d5c9000 r-xp 00000000 08:02 398464 >> /lib64/libdl-2.17.so >> 2b948d5c9000-2b948d7c8000 ---p 00003000 08:02 398464 >> /lib64/libdl-2.17.so >> 2b948d7c8000-2b948d7c9000 r--p 00002000 08:02 398464 >> /lib64/libdl-2.17.so >> 2b948d7c9000-2b948d7ca000 rw-p 00003000 08:02 398464 >> /lib64/libdl-2.17.so >> 2b948d7ca000-2b948d7d8000 r-xp 00000000 08:02 403269 >> /usr/lib64/libgomp.so.1.0.0 >> 2b948d7d8000-2b948d9d7000 ---p 0000e000 08:02 403269 >> /usr/lib64/libgomp.so.1.0.0 >> 2b948d9d7000-2b948d9d8000 r--p 0000d000 08:02 403269 >> /usr/lib64/libgomp.so.1.0.0 >> 2b948d9d8000-2b948d9d9000 rw-p 0000e000 08:02 403269 >> /usr/lib64/libgomp.so.1.0.0 >> 2b948d9d9000-2b948d9da000 rw-p 00000000 00:00 0 >> 2b948d9da000-2b948d9dd000 r-xp 00000000 08:02 398913 >> /usr/lib64/libboost_system.so.1.49.0 >> 2b948d9dd000-2b948dbdc000 ---p 00003000 08:02 398913 >> /usr/lib64/libboost_system.so.1.49.0 >> 2b948dbdc000-2b948dbdd000 r--p 00002000 08:02 398913 >> /usr/lib64/libboost_system.so.1.49.0 >> 2b948dbdd000-2b948dbde000 rw-p 00003000 08:02 398913 >> /usr/lib64/libboost_system.so.1.49.0 >> 2b948dbde000-2b948dbe3000 rw-p 00000000 00:00 0 >> 7fff89104000-7fff89125000 rw-p 00000000 00:00 0 >> [stack] >> 7fff89141000-7fff89142000 r-xp 00000000 00:00 0 >> [vdso] >> ffffffffff600000-ffffffffff601000 r-xp 00000000 00:00 0 >> >> -- >> Chandan kumar Choudhury >> NCL, Pune >> INDIA >> >> -- >> You received this message because you are subscribed to the Google Groups >> "votca" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to [email protected]. >> To post to this group, send email to [email protected]. >> Visit this group at http://groups.google.com/group/votca. >> For more options, visit https://groups.google.com/groups/opt_out. > > > -- > You received this message because you are subscribed to the Google Groups > "votca" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at http://groups.google.com/group/votca. > For more options, visit https://groups.google.com/groups/opt_out. -- Christoph Junghans Web: http://www.compphys.de -- You received this message because you are subscribed to the Google Groups "votca" group. 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