2015-01-09 8:19 GMT-07:00 abrukhno <[email protected]>: > Hi Votcians, > > Is there any way to suppress outputting the running progress of Gromacs and > Votca tools in inverse.log. This "Reading frame" numbers accumulate into huge > logs, which are hard to check on the fly after a couple of iterations, > especially on clusters. Moreover, it constantly writes to disk, reducing the > performance. There is not easy way, "Reading frame" comes out of libgmx. Looking at printcount_ in src/gmxlib/trxio.c there does not seem to be a way to quiet it.
> I have tried to redirect stderr with "2>/dev/null" (for csg_inverse.sh), > or putting "1>/dev/null 2>/dev/null" for inverse.gromacs.log tag, but the > latter removes the logs altogether, which is not desired. inverse.gromacs.log is a separate log file for gromacs program, but not for csg_inverse itself, so that won't work here. "Reading frame" goes to stderr, but forwarding that to /dev/null, one would loss all other error messages. You might be able to create a post-update script, which does something like: sync && sed -e '/Reading frame/d' -i $CSGLOG Christoph > > Thanks > > Andrey > > > > > -- > You received this message because you are subscribed to the Google Groups > "votca" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at http://groups.google.com/group/votca. > For more options, visit https://groups.google.com/d/optout. -- Christoph Junghans Web: http://www.compphys.de -- You received this message because you are subscribed to the Google Groups "votca" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/votca. For more options, visit https://groups.google.com/d/optout.
