2015-07-14 5:54 GMT-06:00 Albert Solernou <[email protected]>:
> Hi,
> I think that there is a bug in csg_call, version 1.3-dev hgid: 2399d10e948e.
> The following command:
>  csg_call --ia-type non-bonded --ia-type C6 --options table.xml
> convert_potential gromacs B4-B4__extrapolate.pot table.xvg
> fails with:
>  csg_get_interaction_property: bondname is undefined (when calling from
> csg_call set it by --ia-name option)
> It fails not matter what the value for "--ia-type" is.
The error message basially says you have to add a "--ia-name" to your
commandline.
The name given after "--ia-name" should match up with the name of the
interaction in table.xml.

>
> However, the same command works for version 1.2.4 hgid: 53b14819554c. I can
> send the input B4-B4__extrapolate.pot and table.xml files, though they are
> pretty standard.
Yep, something things have to change. In 1.3 we are doing a better
extrapolation which needs more values from table.xml like the
interaction's min max and step.

Christoph
>
> Best,
> Albert
>
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-- 
Christoph Junghans
Web: http://www.compphys.de

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