Ok, so I did that and the error was fixed, but now I get a different one:
-- checking for module 'libgromacs_d'
-- package 'libgromacs_d' not found
-- checking for module 'libgromacs'
-- package 'libgromacs' not found
CMake Error at
/usr/share/cmake-2.8/Modules/FindPackageHandleStandardArgs.cmake:108
(message):
Could NOT find GROMACS (missing: GROMACS_LIBRARY GROMACS_INCLUDE_DIR
GROMACS_VERSION)
Call Stack (most recent call first):
/usr/share/cmake-2.8/Modules/FindPackageHandleStandardArgs.cmake:315
(_FPHSA_FAILURE_MESSAGE)
CMakeModules/FindGROMACS.cmake:73 (find_package_handle_standard_args)
CMakeLists.txt:82 (find_package)
My first reaction was to try to install gromacs-dev with apt-get but the
error persists. I find it confusing since I had previously installed
gromacs before I installed votca, so I tried to install gromacs again while
forcing it to be in double precision. When I run sudo make install this was
part of the output:
-- Installing: /usr/local/gromacs/lib/x86_64-linux-gnu/libgromacs_d.so.0.0.0
-- Installing: /usr/local/gromacs/lib/x86_64-linux-gnu/libgromacs_d.so.0
-- Installing: /usr/local/gromacs/lib/x86_64-linux-gnu/libgromacs_d.so
-- Set runtime path of
"/usr/local/gromacs/lib/x86_64-linux-gnu/libgromacs_d.so.0.0.0" to
"$ORIGIN/../lib/x86_64-linux-gnu:/usr/local/lib"
-- Installing:
/usr/local/gromacs/lib/x86_64-linux-gnu/pkgconfig/libgromacs_d.pc
Could it be one of these libraries? Maybe they are not placed in the right
directory or the names are wrong?
Thanks again for your help,
Emilio
El miércoles, 20 de enero de 2016, 0:22:25 (UTC+1), Christoph Junghans
escribió:
>
> 2016-01-19 16:09 GMT-07:00 Emilio Ruiz <[email protected] <javascript:>>:
> > Hi everyone,
> >
> > I'm trying to install VOTCA but when I run the build script I get the
> > following error:
> >
> > [ 93%] Building CXX object
> > src/libtools/CMakeFiles/votca_tools.dir/linalg/gsl/cholesky.cc.o
> > Linking CXX shared library libvotca_tools.so
> > /usr/bin/ld: /usr/local/lib/libfftw3.a(mapflags.o): relocation
> R_X86_64_32
> > against `.rodata' can not be used when making a shared object; recompile
> > with -fPIC
> > /usr/local/lib/libfftw3.a: error adding symbols: Bad value
> > collect2: error: ld returned 1 exit status
> > make[2]: *** [src/libtools/libvotca_tools.so.4] Error 1
> > make[1]: *** [src/libtools/CMakeFiles/votca_tools.dir/all] Error 2
> > make: *** [all] Error 2
> >
> > I have attached cmake's log files (the ones in tools/ and the ones in
> csg/,
> > I'm not sure which ones have the right information here). I guess the
> > problem comes from fftw, but when I installed it there was no
> problem...Am I
> > doing something wrong? Maybe there is something missing? I went over the
> > list of dependencies in the github wiki but I think I have everything
> > installed.
> You need to configure/build fftw with --enable-double --enable-shared, see
> <https://github.com/votca/csg/wiki/Dependencies>
> Also if you are able to install in /usr/local, it might be easier to
> install fftw via your distribution's package manager.
> In general, static libraries (.a files) are a bit hairy to work with in
> cmake.
>
> Cheers,
>
> Christoph
> >
> > Thanks in advance,
> >
> > Emilio
> >
> > --
> > You received this message because you are subscribed to the Google
> Groups
> > "votca" group.
> > To unsubscribe from this group and stop receiving emails from it, send
> an
> > email to [email protected] <javascript:>.
> > To post to this group, send email to [email protected]
> <javascript:>.
> > Visit this group at https://groups.google.com/group/votca.
> > For more options, visit https://groups.google.com/d/optout.
>
>
>
> --
> Christoph Junghans
> Web: http://www.compphys.de
>
--
You received this message because you are subscribed to the Google Groups
"votca" group.
To unsubscribe from this group and stop receiving emails from it, send an email
to [email protected].
To post to this group, send email to [email protected].
Visit this group at https://groups.google.com/group/votca.
For more options, visit https://groups.google.com/d/optout.
Determining if the pthread_create exist failed with the following output:
Change Dir: /home/emilio/votca/src/csg/CMakeFiles/CMakeTmp
Run Build Command:/usr/bin/make "cmTryCompileExec3546599686/fast"
/usr/bin/make -f CMakeFiles/cmTryCompileExec3546599686.dir/build.make
CMakeFiles/cmTryCompileExec3546599686.dir/build
make[1]: Entering directory `/home/emilio/votca/src/csg/CMakeFiles/CMakeTmp'
/usr/bin/cmake -E cmake_progress_report
/home/emilio/votca/src/csg/CMakeFiles/CMakeTmp/CMakeFiles 1
Building C object
CMakeFiles/cmTryCompileExec3546599686.dir/CheckSymbolExists.c.o
/usr/bin/cc -o
CMakeFiles/cmTryCompileExec3546599686.dir/CheckSymbolExists.c.o -c
/home/emilio/votca/src/csg/CMakeFiles/CMakeTmp/CheckSymbolExists.c
Linking C executable cmTryCompileExec3546599686
/usr/bin/cmake -E cmake_link_script
CMakeFiles/cmTryCompileExec3546599686.dir/link.txt --verbose=1
/usr/bin/cc
CMakeFiles/cmTryCompileExec3546599686.dir/CheckSymbolExists.c.o -o
cmTryCompileExec3546599686 -rdynamic
CMakeFiles/cmTryCompileExec3546599686.dir/CheckSymbolExists.c.o: In function
`main':
CheckSymbolExists.c:(.text+0x16): undefined reference to `pthread_create'
collect2: error: ld returned 1 exit status
make[1]: *** [cmTryCompileExec3546599686] Error 1
make[1]: Leaving directory `/home/emilio/votca/src/csg/CMakeFiles/CMakeTmp'
make: *** [cmTryCompileExec3546599686/fast] Error 2
File /home/emilio/votca/src/csg/CMakeFiles/CMakeTmp/CheckSymbolExists.c:
/* */
#include <pthread.h>
int main(int argc, char** argv)
{
(void)argv;
#ifndef pthread_create
return ((int*)(&pthread_create))[argc];
#else
(void)argc;
return 0;
#endif
}
Determining if the function pthread_create exists in the pthreads failed with
the following output:
Change Dir: /home/emilio/votca/src/csg/CMakeFiles/CMakeTmp
Run Build Command:/usr/bin/make "cmTryCompileExec3169836930/fast"
/usr/bin/make -f CMakeFiles/cmTryCompileExec3169836930.dir/build.make
CMakeFiles/cmTryCompileExec3169836930.dir/build
make[1]: Entering directory `/home/emilio/votca/src/csg/CMakeFiles/CMakeTmp'
/usr/bin/cmake -E cmake_progress_report
/home/emilio/votca/src/csg/CMakeFiles/CMakeTmp/CMakeFiles 1
Building C object
CMakeFiles/cmTryCompileExec3169836930.dir/CheckFunctionExists.c.o
/usr/bin/cc -DCHECK_FUNCTION_EXISTS=pthread_create -o
CMakeFiles/cmTryCompileExec3169836930.dir/CheckFunctionExists.c.o -c
/usr/share/cmake-2.8/Modules/CheckFunctionExists.c
Linking C executable cmTryCompileExec3169836930
/usr/bin/cmake -E cmake_link_script
CMakeFiles/cmTryCompileExec3169836930.dir/link.txt --verbose=1
/usr/bin/cc -DCHECK_FUNCTION_EXISTS=pthread_create
CMakeFiles/cmTryCompileExec3169836930.dir/CheckFunctionExists.c.o -o
cmTryCompileExec3169836930 -rdynamic -lpthreads
/usr/bin/ld: cannot find -lpthreads
collect2: error: ld returned 1 exit status
make[1]: *** [cmTryCompileExec3169836930] Error 1
make[1]: Leaving directory `/home/emilio/votca/src/csg/CMakeFiles/CMakeTmp'
make: *** [cmTryCompileExec3169836930/fast] Error 2
Determining if the pthread_create exist failed with the following output:
Change Dir: /home/emilio/votca/src/csg/CMakeFiles/CMakeTmp
Run Build Command:/usr/bin/make "cmTryCompileExec2098096/fast"
/usr/bin/make -f CMakeFiles/cmTryCompileExec2098096.dir/build.make
CMakeFiles/cmTryCompileExec2098096.dir/build
make[1]: Entering directory `/home/emilio/votca/src/csg/CMakeFiles/CMakeTmp'
/usr/bin/cmake -E cmake_progress_report
/home/emilio/votca/src/csg/CMakeFiles/CMakeTmp/CMakeFiles 1
Building C object CMakeFiles/cmTryCompileExec2098096.dir/CheckSymbolExists.c.o
/usr/bin/cc -o CMakeFiles/cmTryCompileExec2098096.dir/CheckSymbolExists.c.o
-c /home/emilio/votca/src/csg/CMakeFiles/CMakeTmp/CheckSymbolExists.c
Linking C executable cmTryCompileExec2098096
/usr/bin/cmake -E cmake_link_script
CMakeFiles/cmTryCompileExec2098096.dir/link.txt --verbose=1
/usr/bin/cc CMakeFiles/cmTryCompileExec2098096.dir/CheckSymbolExists.c.o
-o cmTryCompileExec2098096 -rdynamic
CMakeFiles/cmTryCompileExec2098096.dir/CheckSymbolExists.c.o: In function
`main':
CheckSymbolExists.c:(.text+0x16): undefined reference to `pthread_create'
collect2: error: ld returned 1 exit status
make[1]: *** [cmTryCompileExec2098096] Error 1
make[1]: Leaving directory `/home/emilio/votca/src/csg/CMakeFiles/CMakeTmp'
make: *** [cmTryCompileExec2098096/fast] Error 2
File /home/emilio/votca/src/csg/CMakeFiles/CMakeTmp/CheckSymbolExists.c:
/* */
#include <pthread.h>
int main(int argc, char** argv)
{
(void)argv;
#ifndef pthread_create
return ((int*)(&pthread_create))[argc];
#else
(void)argc;
return 0;
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}
Determining if the function pthread_create exists in the pthreads failed with
the following output:
Change Dir: /home/emilio/votca/src/csg/CMakeFiles/CMakeTmp
Run Build Command:/usr/bin/make "cmTryCompileExec1850339466/fast"
/usr/bin/make -f CMakeFiles/cmTryCompileExec1850339466.dir/build.make
CMakeFiles/cmTryCompileExec1850339466.dir/build
make[1]: Entering directory `/home/emilio/votca/src/csg/CMakeFiles/CMakeTmp'
/usr/bin/cmake -E cmake_progress_report
/home/emilio/votca/src/csg/CMakeFiles/CMakeTmp/CMakeFiles 1
Building C object
CMakeFiles/cmTryCompileExec1850339466.dir/CheckFunctionExists.c.o
/usr/bin/cc -DCHECK_FUNCTION_EXISTS=pthread_create -o
CMakeFiles/cmTryCompileExec1850339466.dir/CheckFunctionExists.c.o -c
/usr/share/cmake-2.8/Modules/CheckFunctionExists.c
Linking C executable cmTryCompileExec1850339466
/usr/bin/cmake -E cmake_link_script
CMakeFiles/cmTryCompileExec1850339466.dir/link.txt --verbose=1
/usr/bin/cc -DCHECK_FUNCTION_EXISTS=pthread_create
CMakeFiles/cmTryCompileExec1850339466.dir/CheckFunctionExists.c.o -o
cmTryCompileExec1850339466 -rdynamic -lpthreads
/usr/bin/ld: cannot find -lpthreads
collect2: error: ld returned 1 exit status
make[1]: *** [cmTryCompileExec1850339466] Error 1
make[1]: Leaving directory `/home/emilio/votca/src/csg/CMakeFiles/CMakeTmp'
make: *** [cmTryCompileExec1850339466/fast] Error 2
Determining if the pthread_create exist failed with the following output:
Change Dir: /home/emilio/votca/src/csg/CMakeFiles/CMakeTmp
Run Build Command:/usr/bin/make "cmTryCompileExec256518524/fast"
/usr/bin/make -f CMakeFiles/cmTryCompileExec256518524.dir/build.make
CMakeFiles/cmTryCompileExec256518524.dir/build
make[1]: Entering directory `/home/emilio/votca/src/csg/CMakeFiles/CMakeTmp'
/usr/bin/cmake -E cmake_progress_report
/home/emilio/votca/src/csg/CMakeFiles/CMakeTmp/CMakeFiles 1
Building C object CMakeFiles/cmTryCompileExec256518524.dir/CheckSymbolExists.c.o
/usr/bin/cc -o
CMakeFiles/cmTryCompileExec256518524.dir/CheckSymbolExists.c.o -c
/home/emilio/votca/src/csg/CMakeFiles/CMakeTmp/CheckSymbolExists.c
Linking C executable cmTryCompileExec256518524
/usr/bin/cmake -E cmake_link_script
CMakeFiles/cmTryCompileExec256518524.dir/link.txt --verbose=1
/usr/bin/cc
CMakeFiles/cmTryCompileExec256518524.dir/CheckSymbolExists.c.o -o
cmTryCompileExec256518524 -rdynamic
CMakeFiles/cmTryCompileExec256518524.dir/CheckSymbolExists.c.o: In function
`main':
CheckSymbolExists.c:(.text+0x16): undefined reference to `pthread_create'
collect2: error: ld returned 1 exit status
make[1]: Leaving directory `/home/emilio/votca/src/csg/CMakeFiles/CMakeTmp'
make[1]: *** [cmTryCompileExec256518524] Error 1
make: *** [cmTryCompileExec256518524/fast] Error 2
File /home/emilio/votca/src/csg/CMakeFiles/CMakeTmp/CheckSymbolExists.c:
/* */
#include <pthread.h>
int main(int argc, char** argv)
{
(void)argv;
#ifndef pthread_create
return ((int*)(&pthread_create))[argc];
#else
(void)argc;
return 0;
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Determining if the function pthread_create exists in the pthreads failed with
the following output:
Change Dir: /home/emilio/votca/src/csg/CMakeFiles/CMakeTmp
Run Build Command:/usr/bin/make "cmTryCompileExec1162291200/fast"
/usr/bin/make -f CMakeFiles/cmTryCompileExec1162291200.dir/build.make
CMakeFiles/cmTryCompileExec1162291200.dir/build
make[1]: Entering directory `/home/emilio/votca/src/csg/CMakeFiles/CMakeTmp'
/usr/bin/cmake -E cmake_progress_report
/home/emilio/votca/src/csg/CMakeFiles/CMakeTmp/CMakeFiles 1
Building C object
CMakeFiles/cmTryCompileExec1162291200.dir/CheckFunctionExists.c.o
/usr/bin/cc -DCHECK_FUNCTION_EXISTS=pthread_create -o
CMakeFiles/cmTryCompileExec1162291200.dir/CheckFunctionExists.c.o -c
/usr/share/cmake-2.8/Modules/CheckFunctionExists.c
Linking C executable cmTryCompileExec1162291200
/usr/bin/cmake -E cmake_link_script
CMakeFiles/cmTryCompileExec1162291200.dir/link.txt --verbose=1
/usr/bin/cc -DCHECK_FUNCTION_EXISTS=pthread_create
CMakeFiles/cmTryCompileExec1162291200.dir/CheckFunctionExists.c.o -o
cmTryCompileExec1162291200 -rdynamic -lpthreads
/usr/bin/ld: cannot find -lpthreads
collect2: error: ld returned 1 exit status
make[1]: *** [cmTryCompileExec1162291200] Error 1
make[1]: Leaving directory `/home/emilio/votca/src/csg/CMakeFiles/CMakeTmp'
make: *** [cmTryCompileExec1162291200/fast] Error 2
Determining if the pthread_create exist failed with the following output:
Change Dir: /home/emilio/votca/src/csg/CMakeFiles/CMakeTmp
Run Build Command:/usr/bin/make "cmTryCompileExec457712493/fast"
/usr/bin/make -f CMakeFiles/cmTryCompileExec457712493.dir/build.make
CMakeFiles/cmTryCompileExec457712493.dir/build
make[1]: Entering directory `/home/emilio/votca/src/csg/CMakeFiles/CMakeTmp'
/usr/bin/cmake -E cmake_progress_report
/home/emilio/votca/src/csg/CMakeFiles/CMakeTmp/CMakeFiles 1
Building C object CMakeFiles/cmTryCompileExec457712493.dir/CheckSymbolExists.c.o
/usr/bin/cc -o
CMakeFiles/cmTryCompileExec457712493.dir/CheckSymbolExists.c.o -c
/home/emilio/votca/src/csg/CMakeFiles/CMakeTmp/CheckSymbolExists.c
Linking C executable cmTryCompileExec457712493
/usr/bin/cmake -E cmake_link_script
CMakeFiles/cmTryCompileExec457712493.dir/link.txt --verbose=1
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CMakeFiles/cmTryCompileExec457712493.dir/CheckSymbolExists.c.o -o
cmTryCompileExec457712493 -rdynamic
CMakeFiles/cmTryCompileExec457712493.dir/CheckSymbolExists.c.o: In function
`main':
CheckSymbolExists.c:(.text+0x16): undefined reference to `pthread_create'
collect2: error: ld returned 1 exit status
make[1]: *** [cmTryCompileExec457712493] Error 1
make[1]: Leaving directory `/home/emilio/votca/src/csg/CMakeFiles/CMakeTmp'
make: *** [cmTryCompileExec457712493/fast] Error 2
File /home/emilio/votca/src/csg/CMakeFiles/CMakeTmp/CheckSymbolExists.c:
/* */
#include <pthread.h>
int main(int argc, char** argv)
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(void)argv;
#ifndef pthread_create
return ((int*)(&pthread_create))[argc];
#else
(void)argc;
return 0;
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Determining if the function pthread_create exists in the pthreads failed with
the following output:
Change Dir: /home/emilio/votca/src/csg/CMakeFiles/CMakeTmp
Run Build Command:/usr/bin/make "cmTryCompileExec3869422637/fast"
/usr/bin/make -f CMakeFiles/cmTryCompileExec3869422637.dir/build.make
CMakeFiles/cmTryCompileExec3869422637.dir/build
make[1]: Entering directory `/home/emilio/votca/src/csg/CMakeFiles/CMakeTmp'
/usr/bin/cmake -E cmake_progress_report
/home/emilio/votca/src/csg/CMakeFiles/CMakeTmp/CMakeFiles 1
Building C object
CMakeFiles/cmTryCompileExec3869422637.dir/CheckFunctionExists.c.o
/usr/bin/cc -DCHECK_FUNCTION_EXISTS=pthread_create -o
CMakeFiles/cmTryCompileExec3869422637.dir/CheckFunctionExists.c.o -c
/usr/share/cmake-2.8/Modules/CheckFunctionExists.c
Linking C executable cmTryCompileExec3869422637
/usr/bin/cmake -E cmake_link_script
CMakeFiles/cmTryCompileExec3869422637.dir/link.txt --verbose=1
/usr/bin/cc -DCHECK_FUNCTION_EXISTS=pthread_create
CMakeFiles/cmTryCompileExec3869422637.dir/CheckFunctionExists.c.o -o
cmTryCompileExec3869422637 -rdynamic -lpthreads
/usr/bin/ld: cannot find -lpthreads
collect2: error: ld returned 1 exit status
make[1]: *** [cmTryCompileExec3869422637] Error 1
make[1]: Leaving directory `/home/emilio/votca/src/csg/CMakeFiles/CMakeTmp'
make: *** [cmTryCompileExec3869422637/fast] Error 2
The system is: Linux - 3.13.0-74-generic - x86_64
Compiling the C compiler identification source file "CMakeCCompilerId.c"
succeeded.
Compiler: /usr/bin/cc
Build flags:
Id flags:
The output was:
0
Compilation of the C compiler identification source "CMakeCCompilerId.c"
produced "a.out"
The C compiler identification is GNU, found in
"/home/emilio/votca/src/csg/CMakeFiles/2.8.12.2/CompilerIdC/a.out"
Compiling the CXX compiler identification source file "CMakeCXXCompilerId.cpp"
succeeded.
Compiler: /usr/bin/c++
Build flags:
Id flags:
The output was:
0
Compilation of the CXX compiler identification source "CMakeCXXCompilerId.cpp"
produced "a.out"
The CXX compiler identification is GNU, found in
"/home/emilio/votca/src/csg/CMakeFiles/2.8.12.2/CompilerIdCXX/a.out"
Determining if the C compiler works passed with the following output:
Change Dir: /home/emilio/votca/src/csg/CMakeFiles/CMakeTmp
Run Build Command:/usr/bin/make "cmTryCompileExec3444431286/fast"
/usr/bin/make -f CMakeFiles/cmTryCompileExec3444431286.dir/build.make
CMakeFiles/cmTryCompileExec3444431286.dir/build
make[1]: Entering directory `/home/emilio/votca/src/csg/CMakeFiles/CMakeTmp'
/usr/bin/cmake -E cmake_progress_report
/home/emilio/votca/src/csg/CMakeFiles/CMakeTmp/CMakeFiles 1
Building C object CMakeFiles/cmTryCompileExec3444431286.dir/testCCompiler.c.o
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Linking C executable cmTryCompileExec3444431286
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make[1]: Leaving directory `/home/emilio/votca/src/csg/CMakeFiles/CMakeTmp'
Detecting C compiler ABI info compiled with the following output:
Change Dir: /home/emilio/votca/src/csg/CMakeFiles/CMakeTmp
Run Build Command:/usr/bin/make "cmTryCompileExec3847696438/fast"
/usr/bin/make -f CMakeFiles/cmTryCompileExec3847696438.dir/build.make
CMakeFiles/cmTryCompileExec3847696438.dir/build
make[1]: Entering directory `/home/emilio/votca/src/csg/CMakeFiles/CMakeTmp'
/usr/bin/cmake -E cmake_progress_report
/home/emilio/votca/src/csg/CMakeFiles/CMakeTmp/CMakeFiles 1
Building C object
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CMakeFiles/cmTryCompileExec3847696438.dir/CMakeCCompilerABI.c.o -c
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Linking C executable cmTryCompileExec3847696438
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arg [-zrelro] ==> ignore
arg [-o] ==> ignore
arg [cmTryCompileExec503525589] ==> ignore
arg [/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crt1.o]
==> ignore
arg [/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crti.o]
==> ignore
arg [/usr/lib/gcc/x86_64-linux-gnu/4.8/crtbegin.o] ==> ignore
arg [-L/usr/lib/gcc/x86_64-linux-gnu/4.8] ==> dir
[/usr/lib/gcc/x86_64-linux-gnu/4.8]
arg [-L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu] ==> dir
[/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu]
arg [-L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib] ==> dir
[/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib]
arg [-L/lib/x86_64-linux-gnu] ==> dir [/lib/x86_64-linux-gnu]
arg [-L/lib/../lib] ==> dir [/lib/../lib]
arg [-L/usr/lib/x86_64-linux-gnu] ==> dir [/usr/lib/x86_64-linux-gnu]
arg [-L/usr/lib/../lib] ==> dir [/usr/lib/../lib]
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==> ignore
arg [-lstdc++] ==> lib [stdc++]
arg [-lm] ==> lib [m]
arg [-lgcc_s] ==> lib [gcc_s]
arg [-lgcc] ==> lib [gcc]
arg [-lc] ==> lib [c]
arg [-lgcc_s] ==> lib [gcc_s]
arg [-lgcc] ==> lib [gcc]
arg [/usr/lib/gcc/x86_64-linux-gnu/4.8/crtend.o] ==> ignore
arg [/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crtn.o]
==> ignore
remove lib [gcc_s]
remove lib [gcc]
remove lib [gcc_s]
remove lib [gcc]
collapse library dir [/usr/lib/gcc/x86_64-linux-gnu/4.8] ==>
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collapse library dir
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[/usr/lib/x86_64-linux-gnu]
collapse library dir [/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib] ==>
[/usr/lib]
collapse library dir [/lib/x86_64-linux-gnu] ==> [/lib/x86_64-linux-gnu]
collapse library dir [/lib/../lib] ==> [/lib]
collapse library dir [/usr/lib/x86_64-linux-gnu] ==>
[/usr/lib/x86_64-linux-gnu]
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Determining if files pthread.h exist passed with the following output:
Change Dir: /home/emilio/votca/src/csg/CMakeFiles/CMakeTmp
Run Build Command:/usr/bin/make "cmTryCompileExec3296730755/fast"
/usr/bin/make -f CMakeFiles/cmTryCompileExec3296730755.dir/build.make
CMakeFiles/cmTryCompileExec3296730755.dir/build
make[1]: Entering directory `/home/emilio/votca/src/csg/CMakeFiles/CMakeTmp'
/usr/bin/cmake -E cmake_progress_report
/home/emilio/votca/src/csg/CMakeFiles/CMakeTmp/CMakeFiles 1
Building C object
CMakeFiles/cmTryCompileExec3296730755.dir/CheckIncludeFiles.c.o
/usr/bin/cc -o
CMakeFiles/cmTryCompileExec3296730755.dir/CheckIncludeFiles.c.o -c
/home/emilio/votca/src/csg/CMakeFiles/CMakeTmp/CheckIncludeFiles.c
Linking C executable cmTryCompileExec3296730755
/usr/bin/cmake -E cmake_link_script
CMakeFiles/cmTryCompileExec3296730755.dir/link.txt --verbose=1
/usr/bin/cc
CMakeFiles/cmTryCompileExec3296730755.dir/CheckIncludeFiles.c.o -o
cmTryCompileExec3296730755 -rdynamic
make[1]: Leaving directory `/home/emilio/votca/src/csg/CMakeFiles/CMakeTmp'
Determining if the function pthread_create exists in the pthread passed with
the following output:
Change Dir: /home/emilio/votca/src/csg/CMakeFiles/CMakeTmp
Run Build Command:/usr/bin/make "cmTryCompileExec3954905019/fast"
/usr/bin/make -f CMakeFiles/cmTryCompileExec3954905019.dir/build.make
CMakeFiles/cmTryCompileExec3954905019.dir/build
make[1]: Entering directory `/home/emilio/votca/src/csg/CMakeFiles/CMakeTmp'
/usr/bin/cmake -E cmake_progress_report
/home/emilio/votca/src/csg/CMakeFiles/CMakeTmp/CMakeFiles 1
Building C object
CMakeFiles/cmTryCompileExec3954905019.dir/CheckFunctionExists.c.o
/usr/bin/cc -DCHECK_FUNCTION_EXISTS=pthread_create -o
CMakeFiles/cmTryCompileExec3954905019.dir/CheckFunctionExists.c.o -c
/usr/share/cmake-2.8/Modules/CheckFunctionExists.c
Linking C executable cmTryCompileExec3954905019
/usr/bin/cmake -E cmake_link_script
CMakeFiles/cmTryCompileExec3954905019.dir/link.txt --verbose=1
/usr/bin/cc -DCHECK_FUNCTION_EXISTS=pthread_create
CMakeFiles/cmTryCompileExec3954905019.dir/CheckFunctionExists.c.o -o
cmTryCompileExec3954905019 -rdynamic -lpthread
make[1]: Leaving directory `/home/emilio/votca/src/csg/CMakeFiles/CMakeTmp'
Determining if the function VotcaToolsFromC exists in the
/home/emilio/votca/lib/libvotca_tools.so passed with the following output:
Change Dir: /home/emilio/votca/src/csg/CMakeFiles/CMakeTmp
Run Build Command:/usr/bin/make "cmTryCompileExec1524525055/fast"
/usr/bin/make -f CMakeFiles/cmTryCompileExec1524525055.dir/build.make
CMakeFiles/cmTryCompileExec1524525055.dir/build
make[1]: Entering directory `/home/emilio/votca/src/csg/CMakeFiles/CMakeTmp'
/usr/bin/cmake -E cmake_progress_report
/home/emilio/votca/src/csg/CMakeFiles/CMakeTmp/CMakeFiles 1
Building C object
CMakeFiles/cmTryCompileExec1524525055.dir/CheckFunctionExists.c.o
/usr/bin/cc -DCHECK_FUNCTION_EXISTS=VotcaToolsFromC -o
CMakeFiles/cmTryCompileExec1524525055.dir/CheckFunctionExists.c.o -c
/usr/share/cmake-2.8/Modules/CheckFunctionExists.c
Linking C executable cmTryCompileExec1524525055
/usr/bin/cmake -E cmake_link_script
CMakeFiles/cmTryCompileExec1524525055.dir/link.txt --verbose=1
/usr/bin/cc -DCHECK_FUNCTION_EXISTS=VotcaToolsFromC
CMakeFiles/cmTryCompileExec1524525055.dir/CheckFunctionExists.c.o -o
cmTryCompileExec1524525055 -rdynamic /home/emilio/votca/lib/libvotca_tools.so
-Wl,-rpath,/home/emilio/votca/lib
make[1]: Leaving directory `/home/emilio/votca/src/csg/CMakeFiles/CMakeTmp'
Determining if files pthread.h exist passed with the following output:
Change Dir: /home/emilio/votca/src/csg/CMakeFiles/CMakeTmp
Run Build Command:/usr/bin/make "cmTryCompileExec767501849/fast"
/usr/bin/make -f CMakeFiles/cmTryCompileExec767501849.dir/build.make
CMakeFiles/cmTryCompileExec767501849.dir/build
make[1]: Entering directory `/home/emilio/votca/src/csg/CMakeFiles/CMakeTmp'
/usr/bin/cmake -E cmake_progress_report
/home/emilio/votca/src/csg/CMakeFiles/CMakeTmp/CMakeFiles 1
Building C object CMakeFiles/cmTryCompileExec767501849.dir/CheckIncludeFiles.c.o
/usr/bin/cc -o
CMakeFiles/cmTryCompileExec767501849.dir/CheckIncludeFiles.c.o -c
/home/emilio/votca/src/csg/CMakeFiles/CMakeTmp/CheckIncludeFiles.c
Linking C executable cmTryCompileExec767501849
/usr/bin/cmake -E cmake_link_script
CMakeFiles/cmTryCompileExec767501849.dir/link.txt --verbose=1
/usr/bin/cc
CMakeFiles/cmTryCompileExec767501849.dir/CheckIncludeFiles.c.o -o
cmTryCompileExec767501849 -rdynamic
make[1]: Leaving directory `/home/emilio/votca/src/csg/CMakeFiles/CMakeTmp'
Determining if the function pthread_create exists in the pthread passed with
the following output:
Change Dir: /home/emilio/votca/src/csg/CMakeFiles/CMakeTmp
Run Build Command:/usr/bin/make "cmTryCompileExec459617504/fast"
/usr/bin/make -f CMakeFiles/cmTryCompileExec459617504.dir/build.make
CMakeFiles/cmTryCompileExec459617504.dir/build
make[1]: Entering directory `/home/emilio/votca/src/csg/CMakeFiles/CMakeTmp'
/usr/bin/cmake -E cmake_progress_report
/home/emilio/votca/src/csg/CMakeFiles/CMakeTmp/CMakeFiles 1
Building C object
CMakeFiles/cmTryCompileExec459617504.dir/CheckFunctionExists.c.o
/usr/bin/cc -DCHECK_FUNCTION_EXISTS=pthread_create -o
CMakeFiles/cmTryCompileExec459617504.dir/CheckFunctionExists.c.o -c
/usr/share/cmake-2.8/Modules/CheckFunctionExists.c
Linking C executable cmTryCompileExec459617504
/usr/bin/cmake -E cmake_link_script
CMakeFiles/cmTryCompileExec459617504.dir/link.txt --verbose=1
/usr/bin/cc -DCHECK_FUNCTION_EXISTS=pthread_create
CMakeFiles/cmTryCompileExec459617504.dir/CheckFunctionExists.c.o -o
cmTryCompileExec459617504 -rdynamic -lpthread
make[1]: Leaving directory `/home/emilio/votca/src/csg/CMakeFiles/CMakeTmp'
Determining if the function VotcaToolsFromC exists in the
/home/emilio/votca/lib/libvotca_tools.so passed with the following output:
Change Dir: /home/emilio/votca/src/csg/CMakeFiles/CMakeTmp
Run Build Command:/usr/bin/make "cmTryCompileExec3483897277/fast"
/usr/bin/make -f CMakeFiles/cmTryCompileExec3483897277.dir/build.make
CMakeFiles/cmTryCompileExec3483897277.dir/build
make[1]: Entering directory `/home/emilio/votca/src/csg/CMakeFiles/CMakeTmp'
/usr/bin/cmake -E cmake_progress_report
/home/emilio/votca/src/csg/CMakeFiles/CMakeTmp/CMakeFiles 1
Building C object
CMakeFiles/cmTryCompileExec3483897277.dir/CheckFunctionExists.c.o
/usr/bin/cc -DCHECK_FUNCTION_EXISTS=VotcaToolsFromC -o
CMakeFiles/cmTryCompileExec3483897277.dir/CheckFunctionExists.c.o -c
/usr/share/cmake-2.8/Modules/CheckFunctionExists.c
Linking C executable cmTryCompileExec3483897277
/usr/bin/cmake -E cmake_link_script
CMakeFiles/cmTryCompileExec3483897277.dir/link.txt --verbose=1
/usr/bin/cc -DCHECK_FUNCTION_EXISTS=VotcaToolsFromC
CMakeFiles/cmTryCompileExec3483897277.dir/CheckFunctionExists.c.o -o
cmTryCompileExec3483897277 -rdynamic /home/emilio/votca/lib/libvotca_tools.so
-Wl,-rpath,/home/emilio/votca/lib
make[1]: Leaving directory `/home/emilio/votca/src/csg/CMakeFiles/CMakeTmp'
Determining if files pthread.h exist passed with the following output:
Change Dir: /home/emilio/votca/src/csg/CMakeFiles/CMakeTmp
Run Build Command:/usr/bin/make "cmTryCompileExec3163861657/fast"
/usr/bin/make -f CMakeFiles/cmTryCompileExec3163861657.dir/build.make
CMakeFiles/cmTryCompileExec3163861657.dir/build
make[1]: Entering directory `/home/emilio/votca/src/csg/CMakeFiles/CMakeTmp'
/usr/bin/cmake -E cmake_progress_report
/home/emilio/votca/src/csg/CMakeFiles/CMakeTmp/CMakeFiles 1
Building C object
CMakeFiles/cmTryCompileExec3163861657.dir/CheckIncludeFiles.c.o
/usr/bin/cc -o
CMakeFiles/cmTryCompileExec3163861657.dir/CheckIncludeFiles.c.o -c
/home/emilio/votca/src/csg/CMakeFiles/CMakeTmp/CheckIncludeFiles.c
Linking C executable cmTryCompileExec3163861657
/usr/bin/cmake -E cmake_link_script
CMakeFiles/cmTryCompileExec3163861657.dir/link.txt --verbose=1
/usr/bin/cc
CMakeFiles/cmTryCompileExec3163861657.dir/CheckIncludeFiles.c.o -o
cmTryCompileExec3163861657 -rdynamic
make[1]: Leaving directory `/home/emilio/votca/src/csg/CMakeFiles/CMakeTmp'
Determining if the function pthread_create exists in the pthread passed with
the following output:
Change Dir: /home/emilio/votca/src/csg/CMakeFiles/CMakeTmp
Run Build Command:/usr/bin/make "cmTryCompileExec1457844018/fast"
/usr/bin/make -f CMakeFiles/cmTryCompileExec1457844018.dir/build.make
CMakeFiles/cmTryCompileExec1457844018.dir/build
make[1]: Entering directory `/home/emilio/votca/src/csg/CMakeFiles/CMakeTmp'
/usr/bin/cmake -E cmake_progress_report
/home/emilio/votca/src/csg/CMakeFiles/CMakeTmp/CMakeFiles 1
Building C object
CMakeFiles/cmTryCompileExec1457844018.dir/CheckFunctionExists.c.o
/usr/bin/cc -DCHECK_FUNCTION_EXISTS=pthread_create -o
CMakeFiles/cmTryCompileExec1457844018.dir/CheckFunctionExists.c.o -c
/usr/share/cmake-2.8/Modules/CheckFunctionExists.c
Linking C executable cmTryCompileExec1457844018
/usr/bin/cmake -E cmake_link_script
CMakeFiles/cmTryCompileExec1457844018.dir/link.txt --verbose=1
/usr/bin/cc -DCHECK_FUNCTION_EXISTS=pthread_create
CMakeFiles/cmTryCompileExec1457844018.dir/CheckFunctionExists.c.o -o
cmTryCompileExec1457844018 -rdynamic -lpthread
make[1]: Leaving directory `/home/emilio/votca/src/csg/CMakeFiles/CMakeTmp'
Determining if the function VotcaToolsFromC exists in the
/home/emilio/votca/lib/libvotca_tools.so passed with the following output:
Change Dir: /home/emilio/votca/src/csg/CMakeFiles/CMakeTmp
Run Build Command:/usr/bin/make "cmTryCompileExec411939286/fast"
/usr/bin/make -f CMakeFiles/cmTryCompileExec411939286.dir/build.make
CMakeFiles/cmTryCompileExec411939286.dir/build
make[1]: Entering directory `/home/emilio/votca/src/csg/CMakeFiles/CMakeTmp'
/usr/bin/cmake -E cmake_progress_report
/home/emilio/votca/src/csg/CMakeFiles/CMakeTmp/CMakeFiles 1
Building C object
CMakeFiles/cmTryCompileExec411939286.dir/CheckFunctionExists.c.o
/usr/bin/cc -DCHECK_FUNCTION_EXISTS=VotcaToolsFromC -o
CMakeFiles/cmTryCompileExec411939286.dir/CheckFunctionExists.c.o -c
/usr/share/cmake-2.8/Modules/CheckFunctionExists.c
Linking C executable cmTryCompileExec411939286
/usr/bin/cmake -E cmake_link_script
CMakeFiles/cmTryCompileExec411939286.dir/link.txt --verbose=1
/usr/bin/cc -DCHECK_FUNCTION_EXISTS=VotcaToolsFromC
CMakeFiles/cmTryCompileExec411939286.dir/CheckFunctionExists.c.o -o
cmTryCompileExec411939286 -rdynamic /home/emilio/votca/lib/libvotca_tools.so
-Wl,-rpath,/home/emilio/votca/lib
make[1]: Leaving directory `/home/emilio/votca/src/csg/CMakeFiles/CMakeTmp'
Determining if files pthread.h exist passed with the following output:
Change Dir: /home/emilio/votca/src/csg/CMakeFiles/CMakeTmp
Run Build Command:/usr/bin/make "cmTryCompileExec2064696176/fast"
/usr/bin/make -f CMakeFiles/cmTryCompileExec2064696176.dir/build.make
CMakeFiles/cmTryCompileExec2064696176.dir/build
make[1]: Entering directory `/home/emilio/votca/src/csg/CMakeFiles/CMakeTmp'
/usr/bin/cmake -E cmake_progress_report
/home/emilio/votca/src/csg/CMakeFiles/CMakeTmp/CMakeFiles 1
Building C object
CMakeFiles/cmTryCompileExec2064696176.dir/CheckIncludeFiles.c.o
/usr/bin/cc -o
CMakeFiles/cmTryCompileExec2064696176.dir/CheckIncludeFiles.c.o -c
/home/emilio/votca/src/csg/CMakeFiles/CMakeTmp/CheckIncludeFiles.c
Linking C executable cmTryCompileExec2064696176
/usr/bin/cmake -E cmake_link_script
CMakeFiles/cmTryCompileExec2064696176.dir/link.txt --verbose=1
/usr/bin/cc
CMakeFiles/cmTryCompileExec2064696176.dir/CheckIncludeFiles.c.o -o
cmTryCompileExec2064696176 -rdynamic
make[1]: Leaving directory `/home/emilio/votca/src/csg/CMakeFiles/CMakeTmp'
Determining if the function pthread_create exists in the pthread passed with
the following output:
Change Dir: /home/emilio/votca/src/csg/CMakeFiles/CMakeTmp
Run Build Command:/usr/bin/make "cmTryCompileExec2743876709/fast"
/usr/bin/make -f CMakeFiles/cmTryCompileExec2743876709.dir/build.make
CMakeFiles/cmTryCompileExec2743876709.dir/build
make[1]: Entering directory `/home/emilio/votca/src/csg/CMakeFiles/CMakeTmp'
/usr/bin/cmake -E cmake_progress_report
/home/emilio/votca/src/csg/CMakeFiles/CMakeTmp/CMakeFiles 1
Building C object
CMakeFiles/cmTryCompileExec2743876709.dir/CheckFunctionExists.c.o
/usr/bin/cc -DCHECK_FUNCTION_EXISTS=pthread_create -o
CMakeFiles/cmTryCompileExec2743876709.dir/CheckFunctionExists.c.o -c
/usr/share/cmake-2.8/Modules/CheckFunctionExists.c
Linking C executable cmTryCompileExec2743876709
/usr/bin/cmake -E cmake_link_script
CMakeFiles/cmTryCompileExec2743876709.dir/link.txt --verbose=1
/usr/bin/cc -DCHECK_FUNCTION_EXISTS=pthread_create
CMakeFiles/cmTryCompileExec2743876709.dir/CheckFunctionExists.c.o -o
cmTryCompileExec2743876709 -rdynamic -lpthread
make[1]: Leaving directory `/home/emilio/votca/src/csg/CMakeFiles/CMakeTmp'
Determining if the function VotcaToolsFromC exists in the
/home/emilio/votca/lib/libvotca_tools.so passed with the following output:
Change Dir: /home/emilio/votca/src/csg/CMakeFiles/CMakeTmp
Run Build Command:/usr/bin/make "cmTryCompileExec204843620/fast"
/usr/bin/make -f CMakeFiles/cmTryCompileExec204843620.dir/build.make
CMakeFiles/cmTryCompileExec204843620.dir/build
make[1]: Entering directory `/home/emilio/votca/src/csg/CMakeFiles/CMakeTmp'
/usr/bin/cmake -E cmake_progress_report
/home/emilio/votca/src/csg/CMakeFiles/CMakeTmp/CMakeFiles 1
Building C object
CMakeFiles/cmTryCompileExec204843620.dir/CheckFunctionExists.c.o
/usr/bin/cc -DCHECK_FUNCTION_EXISTS=VotcaToolsFromC -o
CMakeFiles/cmTryCompileExec204843620.dir/CheckFunctionExists.c.o -c
/usr/share/cmake-2.8/Modules/CheckFunctionExists.c
Linking C executable cmTryCompileExec204843620
/usr/bin/cmake -E cmake_link_script
CMakeFiles/cmTryCompileExec204843620.dir/link.txt --verbose=1
/usr/bin/cc -DCHECK_FUNCTION_EXISTS=VotcaToolsFromC
CMakeFiles/cmTryCompileExec204843620.dir/CheckFunctionExists.c.o -o
cmTryCompileExec204843620 -rdynamic /home/emilio/votca/lib/libvotca_tools.so
-Wl,-rpath,/home/emilio/votca/lib
make[1]: Leaving directory `/home/emilio/votca/src/csg/CMakeFiles/CMakeTmp'
