Dear collegues, I am trying to simulate a polymer (A-B)20. I would like to remove the A-B-A-B-A and A-B-A-B-A-B-A (1-5 and 1-7, AA intramolecular interaction) from the RDF gr(AA) distribution. So far, I have tried the csg_map program in VOTCA using a topol.tpr (without [ exclusions ] and a topol_excl.tpr ( with explicit [ exclusions ]). But the result is the same. The g_rdf program of gromacs gives the expected result. Is it possible to exclude these 1,5 and 1,7 interactions with csg_stat?
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