On Wed, Jan 10, 2018 at 8:19 AM, Martijn Zwijnenburg
<[email protected]> wrote:
> I installed Gromacs via:
>
> ./build.sh --prefix ${prefix} gromacs
>
> I had previously installed the Gromacs and the development packages via the
> standard Ubuntu repository & apt-get but then got an error message that my
> Gromacs version was to old so I removed those packages and installed them
> via buld.sh instead.
I just did a "./build.sh -c --prefix ${prefix} tools gromacs csg" and
it worked for me, but I don't run Ubuntu!
Which version of Ubuntu are running?
>
>
> No, I didn't use any special options, just plain "build.sh --prefix
> ${prefix} tools csg". Eventually I also would like to install ctp but I was
> trying to do this first.
If you don't anticipate to use gromacs input files in ctp, just add
"-DWITH_GMX=OFF" to the build.sh options.
Christoph
>
> Thanks,
>
> Martijn
>
> On Wednesday, 10 January 2018 14:08:35 UTC, Christoph Junghans wrote:
>>
>> On Wed, Jan 10, 2018 at 5:31 AM, Martijn Zwijnenburg
>> <[email protected]> wrote:
>> > Hi,
>> >
>> > I'm trying to build votca but I consistently get the error below when
>> > running; ./build.sh --prefix ${prefix} tools csg, in the csg part of the
>> > build:
>> >
>> > [ 45%] Building CXX object
>> > src/libcsg/CMakeFiles/votca_csg.dir/modules/io/xyzwriter.cc.o
>> >
>> > /home/martijn/bin/votca/src/csg/src/libcsg/modules/io/gmxtopologyreader.cc:
>> > In member function ‘virtual bool
>> > votca::csg::GMXTopologyReader::ReadTopology(std::__cxx11::string,
>> > votca::csg::Topology&)’:
>> >
>> > /home/martijn/bin/votca/src/csg/src/libcsg/modules/io/gmxtopologyreader.cc:52:16:
>> > error: aggregate ‘t_inputrec ir’ has incomplete type and cannot be
>> > defined
>> > t_inputrec ir;
>> > ^
>> > [ 46%] Building CXX object
>> > src/libcsg/CMakeFiles/votca_csg.dir/modules/io/pdbreader.cc.o
>> > [ 47%] Building CXX object
>> > src/libcsg/CMakeFiles/votca_csg.dir/modules/io/groreader.cc.o
>> > [ 48%] Building CXX object
>> > src/libcsg/CMakeFiles/votca_csg.dir/modules/io/pdbwriter.cc.o
>> > src/libcsg/CMakeFiles/votca_csg.dir/build.make:662: recipe for target
>> > 'src/libcsg/CMakeFiles/votca_csg.dir/modules/io/gmxtopologyreader.cc.o'
>> > failed
>> > make[2]: ***
>> > [src/libcsg/CMakeFiles/votca_csg.dir/modules/io/gmxtopologyreader.cc.o]
>> > Error 1
>> > make[2]: *** Waiting for unfinished jobs....
>> > [ 50%] Building CXX object
>> >
>> > src/libcsg/CMakeFiles/votca_csg.dir/modules/io/dlpolytrajectoryreader.cc.o
>> >
>> > /home/martijn/bin/votca/src/csg/src/libcsg/modules/io/gmxtrajectoryreader.cc:
>> > In member function ‘virtual bool
>> > votca::csg::GMXTrajectoryReader::FirstFrame(votca::csg::Topology&)’:
>> >
>> > /home/martijn/bin/votca/src/csg/src/libcsg/modules/io/gmxtrajectoryreader.cc:43:5:
>> > error: ‘output_env_t’ was not declared in this scope
>> > output_env_t oenv;
>> > ^
>> >
>> > /home/martijn/bin/votca/src/csg/src/libcsg/modules/io/gmxtrajectoryreader.cc:45:31:
>> > error: ‘oenv’ was not declared in this scope
>> > output_env_init_default (&oenv);
>> > ^
>> >
>> > /home/martijn/bin/votca/src/csg/src/libcsg/modules/io/gmxtrajectoryreader.cc:45:35:
>> > error: ‘output_env_init_default’ was not declared in this scope
>> > output_env_init_default (&oenv);
>> > ^
>> >
>> > /home/martijn/bin/votca/src/csg/src/libcsg/modules/io/gmxtrajectoryreader.cc:
>> > In member function ‘virtual bool
>> > votca::csg::GMXTrajectoryReader::NextFrame(votca::csg::Topology&)’:
>> >
>> > /home/martijn/bin/votca/src/csg/src/libcsg/modules/io/gmxtrajectoryreader.cc:89:5:
>> > error: ‘output_env_t’ was not declared in this scope
>> > output_env_t oenv;
>> > ^
>> >
>> > /home/martijn/bin/votca/src/csg/src/libcsg/modules/io/gmxtrajectoryreader.cc:91:31:
>> > error: ‘oenv’ was not declared in this scope
>> > output_env_init_default (&oenv);
>> > ^
>> >
>> > /home/martijn/bin/votca/src/csg/src/libcsg/modules/io/gmxtrajectoryreader.cc:91:35:
>> > error: ‘output_env_init_default’ was not declared in this scope
>> > output_env_init_default (&oenv);
>> > ^
>> > src/libcsg/CMakeFiles/votca_csg.dir/build.make:710: recipe for target
>> >
>> > 'src/libcsg/CMakeFiles/votca_csg.dir/modules/io/gmxtrajectoryreader.cc.o'
>> > failed
>> > make[2]: ***
>> >
>> > [src/libcsg/CMakeFiles/votca_csg.dir/modules/io/gmxtrajectoryreader.cc.o]
>> > Error 1
>> > CMakeFiles/Makefile2:450: recipe for target
>> > 'src/libcsg/CMakeFiles/votca_csg.dir/all' failed
>> > make[1]: *** [src/libcsg/CMakeFiles/votca_csg.dir/all] Error 2
>> > Makefile:127: recipe for target 'all' failed
>> > make: *** [all] Error 2
>> >
>> > What could be the problem? I'm building on an Ubuntu machine and before
>> > commencing the build it mentions all required packages are there.
>> What version of Gromacs do you have installed?
>> Did you use any special options or just plain "./build.sh --prefix
>> ${prefix} tools csg" ?
>>
>> Christoph
>> >
>> > Thanks in advance,
>> >
>> > Martijn
>> >
>> > --
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>> > For more options, visit https://groups.google.com/d/optout.
>>
>>
>>
>> --
>> Christoph Junghans
>> Web: http://www.compphys.de
>
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