On Sunday, April 1, 2018 at 11:02:04 AM UTC-5, Christoph Junghans wrote:
>
>
>
> On Sun, Apr 1, 2018, 17:09 <[email protected] <javascript:>> wrote:
>
>>
>>
>> On Sunday, April 1, 2018 at 9:57:21 AM UTC-5, Christoph Junghans wrote:
>>>
>>>
>>> On Sun, Apr 1, 2018 at 16:23 <[email protected]> wrote:
>>>
>>>> Hello,
>>>> I am trying to install Votca using build.sh on Stampede 2 cluster which
>>>> runs on CENTOS. I am loading the required dependencies, but I am getting
>>>> an
>>>> error related to the boost libraries:
>>>> "
>>>> /opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/storage.hpp:299:18:
>>>>
>>>> error: ‘make_array’ is not a member of ‘boost::serialization’
>>>> ar & serialization::make_array(data_, s);
>>>> "
>>>> Is it an incompatible boost version? or there is something I am
>>>> missing?
>>>>
>>>
>>> Can you try to build without MKL?
>>>
>>
>> If I unload MKL from the environment, boost, fftw3 and gsl will be
>> deactivated. I can ask the admins if there is a way around this. But if
>> there is not, is there a way to manually deactivating mkl? I just tried
>> -DWITH_MKL=NO, but this did not change the error.
>>
>
> Try -DCMAKE_DISABLE_FIND_PACKAGE_MKL=ON
>
> This still gave the same error, but with a slightly different error
message. I attached the log.
Thanks.
> Christoph
>
>>
>> Thanks,
>> Nabil
>>
>>>
>>> Christoph
>>>
>>>>
>>>> I attached the error log for more details.
>>>>
>>>> Thanks in advance,
>>>> Nabil
>>>>
>>>> --
>>>> You received this message because you are subscribed to the Google
>>>> Groups "votca" group.
>>>> To unsubscribe from this group and stop receiving emails from it, send
>>>> an email to [email protected].
>>>> To post to this group, send email to [email protected].
>>>> Visit this group at https://groups.google.com/group/votca.
>>>> For more options, visit https://groups.google.com/d/optout.
>>>>
>>> --
>>> Christoph Junghans
>>> Web: http://www.compphys.de
>>>
>> --
>> You received this message because you are subscribed to the Google Groups
>> "votca" group.
>> To unsubscribe from this group and stop receiving emails from it, send an
>> email to [email protected] <javascript:>.
>> To post to this group, send email to [email protected] <javascript:>
>> .
>> Visit this group at https://groups.google.com/group/votca.
>> For more options, visit https://groups.google.com/d/optout.
>>
>
--
You received this message because you are subscribed to the Google Groups
"votca" group.
To unsubscribe from this group and stop receiving emails from it, send an email
to [email protected].
To post to this group, send email to [email protected].
Visit this group at https://groups.google.com/group/votca.
For more options, visit https://groups.google.com/d/optout.
[32;01mThis is VOTCA build.sh, version 2.1.7[0m
Install prefix is '/home1/05073/nramlawi/Programs/VOTCA'
[34;01mUsing 29 jobs for make/ninja[0m
[32;01mWorking on tools[0m
[34;01mSource dir (tools) is already there - skipping checkout[0m
[34;01mcmake -DCMAKE_INSTALL_PREFIX='/home1/05073/nramlawi/Programs/VOTCA'
-DCMAKE_DISABLE_FIND_PACKAGE_MKL=ON -DCMAKE_INSTALL_RPATH_USE_LINK_PATH=ON
/home1/05073/nramlawi/Programs/VOTCA/src/tools[0m
-- The C compiler identification is GNU 4.8.5
-- The CXX compiler identification is GNU 4.8.5
-- Check for working C compiler: /bin/cc
-- Check for working C compiler: /bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /bin/c++
-- Check for working CXX compiler: /bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found Git: /opt/apps/git/2.9.0/bin/git (found version "2.9.0")
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE
-- Boost version: 1.64.0
-- Found the following Boost libraries:
-- program_options
-- filesystem
-- system
-- Found PkgConfig: /bin/pkg-config (found version "0.27.1")
-- Checking for module 'gsl'
-- Found gsl, version 2.3
-- Found GSL: /opt/apps/intel17/gsl/2.3/lib/libgsl.so
-- Looking for gsl_linalg_QR_decomp in /opt/apps/intel17/gsl/2.3/lib/libgsl.so;
-- Looking for gsl_linalg_QR_decomp in /opt/apps/intel17/gsl/2.3/lib/libgsl.so;
- not found
-- Found GSLCBLAS: /opt/apps/intel17/gsl/2.3/lib/libgslcblas.so
-- Looking for cblas_dsyrk in /opt/apps/intel17/gsl/2.3/lib/libgslcblas.so;
-- Looking for cblas_dsyrk in /opt/apps/intel17/gsl/2.3/lib/libgslcblas.so; -
found
-- Looking for gsl_linalg_QR_lssolve in
/opt/apps/intel17/gsl/2.3/lib/libgsl.so;/opt/apps/intel17/gsl/2.3/lib/libgslcblas.so;
-- Looking for gsl_linalg_QR_lssolve in
/opt/apps/intel17/gsl/2.3/lib/libgsl.so;/opt/apps/intel17/gsl/2.3/lib/libgslcblas.so;
- found
-- GSL found, overloading uBLAS prod()
-- Checking for module 'fftw3'
-- Found fftw3, version 3.3.6-pl2
-- Found FFTW3: /opt/apps/intel17/impi17_0/fftw3/3.3.6/lib/libfftw3.so
-- Looking for fftw_plan_r2r_1d in
/opt/apps/intel17/impi17_0/fftw3/3.3.6/lib/libfftw3.so;
-- Looking for fftw_plan_r2r_1d in
/opt/apps/intel17/impi17_0/fftw3/3.3.6/lib/libfftw3.so; - found
-- Looking for assert.h
-- Looking for assert.h - found
-- Looking for math.h
-- Looking for math.h - found
-- Looking for stdio.h
-- Looking for stdio.h - found
-- Looking for stdlib.h
-- Looking for stdlib.h - found
-- Looking for string.h
-- Looking for string.h - found
-- Looking for C++ include cmath
-- Looking for C++ include cmath - found
-- Looking for C++ include fstream
-- Looking for C++ include fstream - found
-- Looking for C++ include functional
-- Looking for C++ include functional - found
-- Looking for C++ include iostream
-- Looking for C++ include iostream - found
-- Looking for C++ include limits
-- Looking for C++ include limits - found
-- Looking for C++ include list
-- Looking for C++ include list - found
-- Looking for C++ include map
-- Looking for C++ include map - found
-- Looking for C++ include ostream
-- Looking for C++ include ostream - found
-- Looking for C++ include sstream
-- Looking for C++ include sstream - found
-- Looking for C++ include stack
-- Looking for C++ include stack - found
-- Looking for C++ include stdexcept
-- Looking for C++ include stdexcept - found
-- Looking for C++ include string
-- Looking for C++ include string - found
-- Looking for C++ include vector
-- Looking for C++ include vector - found
-- Looking for sqrt in m
-- Looking for sqrt in m - found
-- Checking for module 'expat'
-- Found expat, version 2.1.0
-- Found EXPAT: /usr/lib64/libexpat.so
-- Checking for module 'sqlite3'
-- Found sqlite3, version 3.7.17
-- Found SQLITE3: /usr/lib64/libsqlite3.so
-- Performing Test HAVE_AIX
-- Performing Test HAVE_AIX - Failed
-- Found Doxygen: /bin/doxygen (found version "1.8.5") found components:
doxygen dot
-- The following OPTIONAL packages have been found:
* Git
* GSL
* FFTW3
* EXPAT
* PkgConfig
* SQLITE3
* Doxygen
-- The following REQUIRED packages have been found:
* Threads
* Boost (required version >= 1.39.0)
-- Configuring done
-- Generating done
-- Build files have been written to:
/home1/05073/nramlawi/Programs/VOTCA/src/tools/build
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cd /home1/05073/nramlawi/Programs/VOTCA/src/tools/build/src/libtools &&
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cd /home1/05073/nramlawi/Programs/VOTCA/src/tools/build/src/libtools &&
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src/libtools/CMakeFiles/votca_tools.dir/linalg/gsl/svd.cc.o
cd /home1/05073/nramlawi/Programs/VOTCA/src/tools/build/src/libtools &&
/bin/c++ -Dvotca_tools_EXPORTS
-I/home1/05073/nramlawi/Programs/VOTCA/src/tools/include
-I/home1/05073/nramlawi/Programs/VOTCA/src/tools/build/include
-I/opt/apps/intel17/boost/1.64/include -I/opt/apps/intel17/gsl/2.3/include
-I/opt/apps/intel17/impi17_0/fftw3/3.3.6/include
-I/home1/05073/nramlawi/Programs/VOTCA/src/tools/build/src/libtools -O3
-DNDEBUG -fPIC -o CMakeFiles/votca_tools.dir/linalg/gsl/svd.cc.o -c
/home1/05073/nramlawi/Programs/VOTCA/src/tools/src/libtools/linalg/gsl/svd.cc
In file included from
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/vector.hpp:21:0,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/include/votca/tools/spline.h:21,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/include/votca/tools/akimaspline.h:21,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/src/libtools/akimaspline.cc:18:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/storage.hpp: In member
function ‘void boost::numeric::ublas::unbounded_array<T,
ALLOC>::serialize(Archive&, unsigned int)’:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/storage.hpp:299:18:
error: ‘make_array’ is not a member of ‘boost::serialization’
ar & serialization::make_array(data_, s);
^
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/storage.hpp: In member
function ‘void boost::numeric::ublas::bounded_array<T, N,
ALLOC>::serialize(Archive&, unsigned int)’:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/storage.hpp:494:18:
error: ‘make_array’ is not a member of ‘boost::serialization’
ar & serialization::make_array(data_, s);
^
In file included from
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/vector.hpp:21:0,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/include/votca/tools/table.h:22,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/include/votca/tools/histogramnew.h:25,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/src/libtools/histogramnew.cc:18:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/storage.hpp: In member
function ‘void boost::numeric::ublas::unbounded_array<T,
ALLOC>::serialize(Archive&, unsigned int)’:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/storage.hpp:299:18:
error: ‘make_array’ is not a member of ‘boost::serialization’
ar & serialization::make_array(data_, s);
^
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/storage.hpp: In member
function ‘void boost::numeric::ublas::bounded_array<T, N,
ALLOC>::serialize(Archive&, unsigned int)’:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/storage.hpp:494:18:
error: ‘make_array’ is not a member of ‘boost::serialization’
ar & serialization::make_array(data_, s);
^
In file included from
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/vector.hpp:21:0,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/include/votca/tools/spline.h:21,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/src/libtools/spline.cc:18:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/storage.hpp: In member
function ‘void boost::numeric::ublas::unbounded_array<T,
ALLOC>::serialize(Archive&, unsigned int)’:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/storage.hpp:299:18:
error: ‘make_array’ is not a member of ‘boost::serialization’
ar & serialization::make_array(data_, s);
^
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/storage.hpp: In member
function ‘void boost::numeric::ublas::bounded_array<T, N,
ALLOC>::serialize(Archive&, unsigned int)’:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/storage.hpp:494:18:
error: ‘make_array’ is not a member of ‘boost::serialization’
ar & serialization::make_array(data_, s);
^
In file included from
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/vector.hpp:21:0,
from
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/matrix.hpp:18,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/include/votca/tools/votca_gsl_boost_ublas_matrix_prod.h:21,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/include/votca/tools/linalg.h:22,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/src/libtools/linalg.cc:17:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/storage.hpp: In member
function ‘void boost::numeric::ublas::unbounded_array<T,
ALLOC>::serialize(Archive&, unsigned int)’:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/storage.hpp:299:18:
error: ‘make_array’ is not a member of ‘boost::serialization’
ar & serialization::make_array(data_, s);
^
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/storage.hpp: In member
function ‘void boost::numeric::ublas::bounded_array<T, N,
ALLOC>::serialize(Archive&, unsigned int)’:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/storage.hpp:494:18:
error: ‘make_array’ is not a member of ‘boost::serialization’
ar & serialization::make_array(data_, s);
^
In file included from
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/vector.hpp:21:0,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/include/votca/tools/spline.h:21,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/include/votca/tools/cubicspline.h:21,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/src/libtools/cubicspline.cc:18:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/storage.hpp: In member
function ‘void boost::numeric::ublas::unbounded_array<T,
ALLOC>::serialize(Archive&, unsigned int)’:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/storage.hpp:299:18:
error: ‘make_array’ is not a member of ‘boost::serialization’
ar & serialization::make_array(data_, s);
^
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/storage.hpp: In member
function ‘void boost::numeric::ublas::bounded_array<T, N,
ALLOC>::serialize(Archive&, unsigned int)’:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/storage.hpp:494:18:
error: ‘make_array’ is not a member of ‘boost::serialization’
ar & serialization::make_array(data_, s);
^
In file included from
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/vector.hpp:21:0,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/include/votca/tools/spline.h:21,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/include/votca/tools/linspline.h:21,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/src/libtools/linspline.cc:18:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/storage.hpp: In member
function ‘void boost::numeric::ublas::unbounded_array<T,
ALLOC>::serialize(Archive&, unsigned int)’:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/storage.hpp:299:18:
error: ‘make_array’ is not a member of ‘boost::serialization’
ar & serialization::make_array(data_, s);
^
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/storage.hpp: In member
function ‘void boost::numeric::ublas::bounded_array<T, N,
ALLOC>::serialize(Archive&, unsigned int)’:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/storage.hpp:494:18:
error: ‘make_array’ is not a member of ‘boost::serialization’
ar & serialization::make_array(data_, s);
^
make[2]: *** [src/libtools/CMakeFiles/votca_tools.dir/histogramnew.cc.o] Error 1
make[2]: *** Waiting for unfinished jobs....
In file included from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/src/libtools/akimaspline.cc:19:0:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/matrix.hpp: In member
function ‘void boost::numeric::ublas::c_matrix<T, M, N>::serialize(Archive&,
unsigned int)’:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/matrix.hpp:5977:18:
error: ‘make_array’ is not a member of ‘boost::serialization’
ar & serialization::make_array(data_, N);
^
make[2]: *** [src/libtools/CMakeFiles/votca_tools.dir/spline.cc.o] Error 1
In file included from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/include/votca/tools/votca_gsl_boost_ublas_matrix_prod.h:21:0,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/include/votca/tools/linalg.h:22,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/src/libtools/linalg.cc:17:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/matrix.hpp: In member
function ‘void boost::numeric::ublas::c_matrix<T, M, N>::serialize(Archive&,
unsigned int)’:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/matrix.hpp:5977:18:
error: ‘make_array’ is not a member of ‘boost::serialization’
ar & serialization::make_array(data_, N);
^
In file included from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/src/libtools/cubicspline.cc:19:0:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/matrix.hpp: In member
function ‘void boost::numeric::ublas::c_matrix<T, M, N>::serialize(Archive&,
unsigned int)’:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/matrix.hpp:5977:18:
error: ‘make_array’ is not a member of ‘boost::serialization’
ar & serialization::make_array(data_, N);
^
In file included from
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/vector.hpp:21:0,
from
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/matrix.hpp:18,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/include/votca/tools/votca_gsl_boost_ublas_matrix_prod.h:21,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/include/votca/tools/linalg.h:22,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/src/libtools/linalg/gsl/invert.cc:18:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/storage.hpp: In member
function ‘void boost::numeric::ublas::unbounded_array<T,
ALLOC>::serialize(Archive&, unsigned int)’:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/storage.hpp:299:18:
error: ‘make_array’ is not a member of ‘boost::serialization’
ar & serialization::make_array(data_, s);
^
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/storage.hpp: In member
function ‘void boost::numeric::ublas::bounded_array<T, N,
ALLOC>::serialize(Archive&, unsigned int)’:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/storage.hpp:494:18:
error: ‘make_array’ is not a member of ‘boost::serialization’
ar & serialization::make_array(data_, s);
^
In file included from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/src/libtools/linspline.cc:19:0:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/matrix.hpp: In member
function ‘void boost::numeric::ublas::c_matrix<T, M, N>::serialize(Archive&,
unsigned int)’:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/matrix.hpp:5977:18:
error: ‘make_array’ is not a member of ‘boost::serialization’
ar & serialization::make_array(data_, N);
^
In file included from
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/vector.hpp:21:0,
from
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/matrix.hpp:18,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/include/votca/tools/votca_gsl_boost_ublas_matrix_prod.h:21,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/include/votca/tools/linalg.h:22,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/src/libtools/linalg/gsl/cholesky.cc:18:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/storage.hpp: In member
function ‘void boost::numeric::ublas::unbounded_array<T,
ALLOC>::serialize(Archive&, unsigned int)’:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/storage.hpp:299:18:
error: ‘make_array’ is not a member of ‘boost::serialization’
ar & serialization::make_array(data_, s);
^
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/storage.hpp: In member
function ‘void boost::numeric::ublas::bounded_array<T, N,
ALLOC>::serialize(Archive&, unsigned int)’:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/storage.hpp:494:18:
error: ‘make_array’ is not a member of ‘boost::serialization’
ar & serialization::make_array(data_, s);
^
In file included from
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/vector.hpp:21:0,
from
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/matrix.hpp:18,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/include/votca/tools/votca_gsl_boost_ublas_matrix_prod.h:21,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/include/votca/tools/linalg.h:22,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/src/libtools/linalg/gsl/eigensystems.cc:18:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/storage.hpp: In member
function ‘void boost::numeric::ublas::unbounded_array<T,
ALLOC>::serialize(Archive&, unsigned int)’:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/storage.hpp:299:18:
error: ‘make_array’ is not a member of ‘boost::serialization’
ar & serialization::make_array(data_, s);
^
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/storage.hpp: In member
function ‘void boost::numeric::ublas::bounded_array<T, N,
ALLOC>::serialize(Archive&, unsigned int)’:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/storage.hpp:494:18:
error: ‘make_array’ is not a member of ‘boost::serialization’
ar & serialization::make_array(data_, s);
^
make[2]: *** [src/libtools/CMakeFiles/votca_tools.dir/akimaspline.cc.o] Error 1
In file included from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/include/votca/tools/votca_gsl_boost_ublas_matrix_prod.h:21:0,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/include/votca/tools/linalg.h:22,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/src/libtools/linalg/gsl/invert.cc:18:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/matrix.hpp: In member
function ‘void boost::numeric::ublas::c_matrix<T, M, N>::serialize(Archive&,
unsigned int)’:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/matrix.hpp:5977:18:
error: ‘make_array’ is not a member of ‘boost::serialization’
ar & serialization::make_array(data_, N);
^
In file included from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/include/votca/tools/votca_gsl_boost_ublas_matrix_prod.h:21:0,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/include/votca/tools/linalg.h:22,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/src/libtools/linalg/gsl/eigensystems.cc:18:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/matrix.hpp: In member
function ‘void boost::numeric::ublas::c_matrix<T, M, N>::serialize(Archive&,
unsigned int)’:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/matrix.hpp:5977:18:
error: ‘make_array’ is not a member of ‘boost::serialization’
ar & serialization::make_array(data_, N);
^
In file included from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/include/votca/tools/votca_gsl_boost_ublas_matrix_prod.h:21:0,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/include/votca/tools/linalg.h:22,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/src/libtools/linalg/gsl/cholesky.cc:18:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/matrix.hpp: In member
function ‘void boost::numeric::ublas::c_matrix<T, M, N>::serialize(Archive&,
unsigned int)’:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/matrix.hpp:5977:18:
error: ‘make_array’ is not a member of ‘boost::serialization’
ar & serialization::make_array(data_, N);
^
make[2]: *** [src/libtools/CMakeFiles/votca_tools.dir/linalg.cc.o] Error 1
In file included from
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/vector.hpp:21:0,
from
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/matrix.hpp:18,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/include/votca/tools/votca_gsl_boost_ublas_matrix_prod.h:21,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/include/votca/tools/linalg.h:22,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/src/libtools/linalg/gsl/svd.cc:18:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/storage.hpp: In member
function ‘void boost::numeric::ublas::unbounded_array<T,
ALLOC>::serialize(Archive&, unsigned int)’:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/storage.hpp:299:18:
error: ‘make_array’ is not a member of ‘boost::serialization’
ar & serialization::make_array(data_, s);
^
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/storage.hpp: In member
function ‘void boost::numeric::ublas::bounded_array<T, N,
ALLOC>::serialize(Archive&, unsigned int)’:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/storage.hpp:494:18:
error: ‘make_array’ is not a member of ‘boost::serialization’
ar & serialization::make_array(data_, s);
^
make[2]: *** [src/libtools/CMakeFiles/votca_tools.dir/cubicspline.cc.o] Error 1
make[2]: *** [src/libtools/CMakeFiles/votca_tools.dir/linspline.cc.o] Error 1
make[2]: *** [src/libtools/CMakeFiles/votca_tools.dir/linalg/gsl/invert.cc.o]
Error 1
In file included from
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/vector.hpp:21:0,
from
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/matrix.hpp:18,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/include/votca/tools/votca_gsl_boost_ublas_matrix_prod.h:21,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/include/votca/tools/linalg.h:22,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/src/libtools/linalg/gsl/qrsolve.cc:18:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/storage.hpp: In member
function ‘void boost::numeric::ublas::unbounded_array<T,
ALLOC>::serialize(Archive&, unsigned int)’:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/storage.hpp:299:18:
error: ‘make_array’ is not a member of ‘boost::serialization’
ar & serialization::make_array(data_, s);
^
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/storage.hpp: In member
function ‘void boost::numeric::ublas::bounded_array<T, N,
ALLOC>::serialize(Archive&, unsigned int)’:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/storage.hpp:494:18:
error: ‘make_array’ is not a member of ‘boost::serialization’
ar & serialization::make_array(data_, s);
^
make[2]: *** [src/libtools/CMakeFiles/votca_tools.dir/linalg/gsl/cholesky.cc.o]
Error 1
In file included from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/include/votca/tools/votca_gsl_boost_ublas_matrix_prod.h:21:0,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/include/votca/tools/linalg.h:22,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/src/libtools/linalg/gsl/svd.cc:18:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/matrix.hpp: In member
function ‘void boost::numeric::ublas::c_matrix<T, M, N>::serialize(Archive&,
unsigned int)’:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/matrix.hpp:5977:18:
error: ‘make_array’ is not a member of ‘boost::serialization’
ar & serialization::make_array(data_, N);
^
make[2]: ***
[src/libtools/CMakeFiles/votca_tools.dir/linalg/gsl/eigensystems.cc.o] Error 1
In file included from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/include/votca/tools/votca_gsl_boost_ublas_matrix_prod.h:21:0,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/include/votca/tools/linalg.h:22,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/src/libtools/linalg/gsl/qrsolve.cc:18:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/matrix.hpp: In member
function ‘void boost::numeric::ublas::c_matrix<T, M, N>::serialize(Archive&,
unsigned int)’:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/matrix.hpp:5977:18:
error: ‘make_array’ is not a member of ‘boost::serialization’
ar & serialization::make_array(data_, N);
^
make[2]: *** [src/libtools/CMakeFiles/votca_tools.dir/linalg/gsl/svd.cc.o]
Error 1
In file included from
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/vector.hpp:21:0,
from
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/lu.hpp:19,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/include/votca/tools/vec.h:25,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/include/votca/tools/property.h:30,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/include/votca/tools/propertyiomanipulator.h:23,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/src/libtools/propertyiomanipulator.cc:18:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/storage.hpp: In member
function ‘void boost::numeric::ublas::unbounded_array<T,
ALLOC>::serialize(Archive&, unsigned int)’:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/storage.hpp:299:18:
error: ‘make_array’ is not a member of ‘boost::serialization’
ar & serialization::make_array(data_, s);
^
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/storage.hpp: In member
function ‘void boost::numeric::ublas::bounded_array<T, N,
ALLOC>::serialize(Archive&, unsigned int)’:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/storage.hpp:494:18:
error: ‘make_array’ is not a member of ‘boost::serialization’
ar & serialization::make_array(data_, s);
^
In file included from
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/vector.hpp:21:0,
from
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/lu.hpp:19,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/include/votca/tools/vec.h:25,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/include/votca/tools/matrix.h:23,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/src/libtools/matrix.cc:20:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/storage.hpp: In member
function ‘void boost::numeric::ublas::unbounded_array<T,
ALLOC>::serialize(Archive&, unsigned int)’:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/storage.hpp:299:18:
error: ‘make_array’ is not a member of ‘boost::serialization’
ar & serialization::make_array(data_, s);
^
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/storage.hpp: In member
function ‘void boost::numeric::ublas::bounded_array<T, N,
ALLOC>::serialize(Archive&, unsigned int)’:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/storage.hpp:494:18:
error: ‘make_array’ is not a member of ‘boost::serialization’
ar & serialization::make_array(data_, s);
^
In file included from
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/triangular.hpp:16:0,
from
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/lu.hpp:20,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/include/votca/tools/vec.h:25,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/include/votca/tools/property.h:30,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/include/votca/tools/propertyiomanipulator.h:23,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/src/libtools/propertyiomanipulator.cc:18:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/matrix.hpp: In member
function ‘void boost::numeric::ublas::c_matrix<T, M, N>::serialize(Archive&,
unsigned int)’:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/matrix.hpp:5977:18:
error: ‘make_array’ is not a member of ‘boost::serialization’
ar & serialization::make_array(data_, N);
^
make[2]: *** [src/libtools/CMakeFiles/votca_tools.dir/linalg/gsl/qrsolve.cc.o]
Error 1
In file included from
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/vector.hpp:21:0,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/include/votca/tools/table.h:22,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/src/libtools/table.cc:21:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/storage.hpp: In member
function ‘void boost::numeric::ublas::unbounded_array<T,
ALLOC>::serialize(Archive&, unsigned int)’:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/storage.hpp:299:18:
error: ‘make_array’ is not a member of ‘boost::serialization’
ar & serialization::make_array(data_, s);
^
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/storage.hpp: In member
function ‘void boost::numeric::ublas::bounded_array<T, N,
ALLOC>::serialize(Archive&, unsigned int)’:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/storage.hpp:494:18:
error: ‘make_array’ is not a member of ‘boost::serialization’
ar & serialization::make_array(data_, s);
^
In file included from
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/triangular.hpp:16:0,
from
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/lu.hpp:20,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/include/votca/tools/vec.h:25,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/include/votca/tools/matrix.h:23,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/src/libtools/matrix.cc:20:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/matrix.hpp: In member
function ‘void boost::numeric::ublas::c_matrix<T, M, N>::serialize(Archive&,
unsigned int)’:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/matrix.hpp:5977:18:
error: ‘make_array’ is not a member of ‘boost::serialization’
ar & serialization::make_array(data_, N);
^
make[2]: ***
[src/libtools/CMakeFiles/votca_tools.dir/propertyiomanipulator.cc.o] Error 1
make[2]: *** [src/libtools/CMakeFiles/votca_tools.dir/table.cc.o] Error 1
make[2]: *** [src/libtools/CMakeFiles/votca_tools.dir/matrix.cc.o] Error 1
In file included from
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/vector.hpp:21:0,
from
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/lu.hpp:19,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/include/votca/tools/vec.h:25,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/include/votca/tools/property.h:30,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/src/libtools/property.cc:28:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/storage.hpp: In member
function ‘void boost::numeric::ublas::unbounded_array<T,
ALLOC>::serialize(Archive&, unsigned int)’:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/storage.hpp:299:18:
error: ‘make_array’ is not a member of ‘boost::serialization’
ar & serialization::make_array(data_, s);
^
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/storage.hpp: In member
function ‘void boost::numeric::ublas::bounded_array<T, N,
ALLOC>::serialize(Archive&, unsigned int)’:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/storage.hpp:494:18:
error: ‘make_array’ is not a member of ‘boost::serialization’
ar & serialization::make_array(data_, s);
^
In file included from
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/triangular.hpp:16:0,
from
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/lu.hpp:20,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/include/votca/tools/vec.h:25,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/include/votca/tools/property.h:30,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/src/libtools/property.cc:28:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/matrix.hpp: In member
function ‘void boost::numeric::ublas::c_matrix<T, M, N>::serialize(Archive&,
unsigned int)’:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/matrix.hpp:5977:18:
error: ‘make_array’ is not a member of ‘boost::serialization’
ar & serialization::make_array(data_, N);
^
In file included from
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/vector.hpp:21:0,
from
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/lu.hpp:19,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/include/votca/tools/vec.h:25,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/include/votca/tools/property.h:30,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/include/votca/tools/application.h:22,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/src/libtools/application.cc:19:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/storage.hpp: In member
function ‘void boost::numeric::ublas::unbounded_array<T,
ALLOC>::serialize(Archive&, unsigned int)’:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/storage.hpp:299:18:
error: ‘make_array’ is not a member of ‘boost::serialization’
ar & serialization::make_array(data_, s);
^
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/storage.hpp: In member
function ‘void boost::numeric::ublas::bounded_array<T, N,
ALLOC>::serialize(Archive&, unsigned int)’:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/storage.hpp:494:18:
error: ‘make_array’ is not a member of ‘boost::serialization’
ar & serialization::make_array(data_, s);
^
In file included from
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/triangular.hpp:16:0,
from
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/lu.hpp:20,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/include/votca/tools/vec.h:25,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/include/votca/tools/property.h:30,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/include/votca/tools/application.h:22,
from
/home1/05073/nramlawi/Programs/VOTCA/src/tools/src/libtools/application.cc:19:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/matrix.hpp: In member
function ‘void boost::numeric::ublas::c_matrix<T, M, N>::serialize(Archive&,
unsigned int)’:
/opt/apps/intel17/boost/1.64/include/boost/numeric/ublas/matrix.hpp:5977:18:
error: ‘make_array’ is not a member of ‘boost::serialization’
ar & serialization::make_array(data_, N);
^
make[2]: *** [src/libtools/CMakeFiles/votca_tools.dir/property.cc.o] Error 1
make[2]: *** [src/libtools/CMakeFiles/votca_tools.dir/application.cc.o] Error 1
make[2]: Leaving directory
`/home1/05073/nramlawi/Programs/VOTCA/src/tools/build'
make[1]: *** [src/libtools/CMakeFiles/votca_tools.dir/all] Error 2
make[1]: Leaving directory
`/home1/05073/nramlawi/Programs/VOTCA/src/tools/build'
make: *** [all] Error 2
