On Thu, Aug 23, 2018 at 5:15 PM <[email protected]> wrote:
>
>
> I got it to work on the linux mint 18.2 but I am not sure how.
>
> I tried to install it from a binary from this repository deb 
> http://archive.ubuntu.com/ubuntu/ bionic main
>  after I had already compiled the master version
> During installation it said :
> apt-cache search votca
> libvotca-csg2 - VOTCA's coarse-graining library
> libvotca-csg2-dev - VOTCA's coarse-graining library, development kit
> libvotca-tools-dev - VOTCA's tools library, development kit
> libvotca-tools2 - VOTCA's tools library
> votca-csg - VOTCA's coarse-graining engine
> votca-csg-scripts - VOTCA's coarse-graining scripts
> votca-csg-tutorials - VOTCA's coarse-graining tutorials
> martin@martin-linux ~ $ sudo apt-get install votca-csg
> Reading package lists... Done
> Building dependency tree
> Reading state information... Done
> The following packages were automatically installed and are no longer 
> required:
>   cabextract gstreamer0.10-ffmpeg libavcodec-extra libhal1-flash libmspack0
>   libunshield0 oxideqt-codecs-extra unshield
> Use 'sudo apt autoremove' to remove them.
> The following additional packages will be installed:
>   libvotca-csg2 libvotca-tools2 votca-csg-scripts
> Suggested packages:
>   votca-csg-tutorials
> The following NEW packages will be installed:
>   libvotca-csg2 libvotca-tools2 votca-csg votca-csg-scripts
> 0 upgraded, 4 newly installed, 0 to remove and 1524 not upgraded.
> Need to get 584 kB of archives.
> After this operation, 2.491 kB of additional disk space will be used.
> Do you want to continue? [Y/n] y
> Get:1 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libvotca-tools2 
> amd64 1.2.4-1.1 [120 kB]
> Get:2 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libvotca-csg2 
> amd64 1.2.4-2.1 [155 kB]
> Get:3 http://archive.ubuntu.com/ubuntu xenial/universe amd64 
> votca-csg-scripts all 1.2.4-2.1 [45,7 kB]
> Get:4 http://archive.ubuntu.com/ubuntu xenial/universe amd64 votca-csg amd64 
> 1.2.4-2.1 [263 kB]
> Fetched 584 kB in 0s (1.223 kB/s)
> Selecting previously unselected package libvotca-tools2.
> (Reading database ... 235011 files and directories currently installed.)
> Preparing to unpack .../libvotca-tools2_1.2.4-1.1_amd64.deb ...
> Unpacking libvotca-tools2 (1.2.4-1.1) ...
> Selecting previously unselected package libvotca-csg2.
> Preparing to unpack .../libvotca-csg2_1.2.4-2.1_amd64.deb ...
> Unpacking libvotca-csg2 (1.2.4-2.1) ...
> Selecting previously unselected package votca-csg-scripts.
> Preparing to unpack .../votca-csg-scripts_1.2.4-2.1_all.deb ...
> Unpacking votca-csg-scripts (1.2.4-2.1) ...
> Selecting previously unselected package votca-csg.
> Preparing to unpack .../votca-csg_1.2.4-2.1_amd64.deb ...
> Unpacking votca-csg (1.2.4-2.1) ...
> Processing triggers for libc-bin (2.23-0ubuntu10) ...
> Processing triggers for man-db (2.7.5-1) ...
> Setting up libvotca-tools2 (1.2.4-1.1) ...
> Setting up libvotca-csg2 (1.2.4-2.1) ...
> Setting up votca-csg-scripts (1.2.4-2.1) ...
> Setting up votca-csg (1.2.4-2.1) ...
>
> I had tried this before on the ubuntu as the very first try but the 1.2.4 
> version did not  support lammps thats why I tried to build it from source.
> My guess is that during compilation something went wrong or was missing and 
> was fixed by "installing" the older version over it.
> Anyway it is running now as I am writing this post.
> I was wondering if you could make a newer ubuntu binary available or if you 
> already have point me to it.
Well, Ubuntu 18.04 comes with votca-1.4.1!

> Also how can I check which votca_csg version I am running now?
Run "csg_call --version" or "csg_stat --help"

>
> Thank you very much again for the quick replies and the help. I may need it 
> in the future again ;)
Can you try this patch
https://github.com/votca/votca/commit/1630c6b293849a0b2028d21a8d9c89a4d77a4b25
And rebuild everything with -DENABLE_RPATH_INJECT=ON ?

Christoph
>
> Am Donnerstag, 23. August 2018 22:39:51 UTC+2 schrieb [email protected]:
>>
>> I did but no change.
>> I was however able to get more from the error message loop. It refers to 
>> line 348 in the common_functions.sh all the time.
>> I also tried to compile it on another machine that runs Linux mint 18.04 but 
>>  it shows the same behavior as the Ubuntu 16.04.
>>
>> Martin
>>
>> Am Donnerstag, 23. August 2018 14:49:53 UTC+2 schrieb Christoph Junghans:
>>>
>>>
>>>
>>> On Thu, Aug 23, 2018, 00:50 <[email protected]> wrote:
>>>>
>>>> I am running Ubuntu 16.04.4 LTS
>>>>
>>>> The xml file is ok (no output from command)
>>>>
>>>> When I do either of the two csg_call commands the termiinal is stuck in a 
>>>> loop and tries to terminate a process that is not there I can only stop it 
>>>> with killall csg_call
>>>> but I do get an error message:
>>>>
>>>> for the first one:
>>>>
>>>> ##################################################################################################################################
>>>> #                                                                          
>>>>                                                       #
>>>> # ERROR:                                                                   
>>>>                                                       #
>>>> # critical: 'csg_property --file 
>>>> /usr/local/share/votca/xml/csg_defaults.xml --path cg.inverse.program 
>>>> --short --print .' failed #
>>>> # Details can be found above                                               
>>>>                                                       #
>>>> #                                                                          
>>>>                                                       #
>>>> ##################################################################################################################################
>>>> /usr/local/share/votca/scripts/inverse/functions_common.sh: line 136: 
>>>> kill: (11334) - No such process
>>>> csg_property: error while loading shared libraries: libvotca_csg.so.5: 
>>>> cannot open shared object file: No such file or directory
>>>>
>>>> for the second one:
>>>>
>>>> ###################################################################################################
>>>> #                                                                          
>>>>                        #
>>>> # ERROR:                                                                   
>>>>                        #
>>>> # critical: 'csg_property --file settings.xml --path cg.inverse.program 
>>>> --short --print .' failed #
>>>> # Details can be found above                                               
>>>>                        #
>>>> #                                                                          
>>>>                        #
>>>> ###################################################################################################
>>>> /usr/local/share/votca/scripts/inverse/functions_common.sh: line 136: 
>>>> kill: (14732) - No such process
>>>> csg_get_property: No value for 'cg.inverse.program' found in settings.xml, 
>>>> trying /usr/local/share/votca/xml/csg_defaults.xml
>>>> csg_property: error while loading shared libraries: libvotca_csg.so.5: 
>>>> cannot open shared object file: No such file or directory
>>>>
>>>> Maybe this can shed some light on the problem.
>>>
>>> Try to "source VOTCARC.bash" first and rerun!
>>>
>>> Christoph
>>>>
>>>>
>>>> Greetings Martin
>>>>
>>>>
>>>>
>>>> Am Mittwoch, 22. August 2018 15:42:05 UTC+2 schrieb [email protected]:
>>>>>
>>>>> Ok I will do this tomorrow as I leave early today from work.
>>>>> thank you so far for the quick replies :)
>>>>>
>>>>> Martin
>>>>>
>>>>> Am Mittwoch, 22. August 2018 15:01:28 UTC+2 schrieb Christoph Junghans:
>>>>>>
>>>>>> Hmm, one step closer.
>>>>>> What Linux Distribution and what version of it are you using?
>>>>>>
>>>>>> Can you check that your xml file is valid, with
>>>>>> $ xmlwf settings.xml
>>>>>> (a good xml file should have no output)
>>>>>>
>>>>>> If that is the case, check what the output of:
>>>>>> $ csg_call --options settings.xml function csg_get_property 
>>>>>> cg.inverse.log_file
>>>>>> and
>>>>>> $ csg_call --debug --options settings.xml function csg_get_property
>>>>>> cg.inverse.log_file
>>>>>> and post it.
>>>>>>
>>>>>> Christoph
>>>>>> On Wed, Aug 22, 2018 at 6:42 AM <[email protected]> wrote:
>>>>>> >
>>>>>> > Ok this is the output:
>>>>>> >
>>>>>> > + [[ --debug = \-\-\h\e\l\p ]]
>>>>>> > + source /usr/local/share/votca/scripts/inverse/start_framework.sh
>>>>>> > ++ '[' --debug = --help ']'
>>>>>> > ++ [[ -n /usr/local/share/votca ]]
>>>>>> > ++ [[ -d /usr/local/share/votca ]]
>>>>>> > ++ [[ -d /usr/local/share/votca/scripts/inverse ]]
>>>>>> > ++ [[ -f /usr/local/share/votca/scripts/inverse/inverse.sh ]]
>>>>>> > ++ [[ -f /usr/local/share/votca/scripts/inverse/functions_common.sh ]]
>>>>>> > ++ source /usr/local/share/votca/scripts/inverse/functions_common.sh
>>>>>> > +++ [[ --debug = \-\-\h\e\l\p ]]
>>>>>> > +++ export BASH
>>>>>> > +++ shopt -s extglob
>>>>>> > +++ export -f msg
>>>>>> > +++ export -f show_callstack
>>>>>> > +++ unset -f die
>>>>>> > +++ export -f die
>>>>>> > +++ export -f cat_external
>>>>>> > +++ export -f do_external
>>>>>> > +++ export -f critical
>>>>>> > +++ export -f for_all
>>>>>> > +++ export -f csg_get_interaction_property
>>>>>> > +++ export -f csg_get_property
>>>>>> > +++ export -f trim_all
>>>>>> > +++ export -f mark_done
>>>>>> > +++ export -f is_done
>>>>>> > +++ export -f is_int
>>>>>> > +++ export -f to_int
>>>>>> > +++ export -f is_part
>>>>>> > +++ export -f has_duplicate
>>>>>> > +++ export -f remove_duplicate
>>>>>> > +++ export -f is_num
>>>>>> > +++ export -f get_stepname
>>>>>> > +++ export -f update_stepnames
>>>>>> > +++ export -f get_current_step_dir
>>>>>> > +++ export -f get_last_step_dir
>>>>>> > +++ export -f get_main_dir
>>>>>> > +++ export -f get_current_step_nr
>>>>>> > +++ export -f get_step_nr
>>>>>> > +++ export -f cp_from_main_dir
>>>>>> > +++ export -f cp_from_last_step
>>>>>> > +++ export -f get_time
>>>>>> > +++ export -f get_number_tasks
>>>>>> > +++ export -f get_table_comment
>>>>>> > +++ export -f csg_inverse_clean
>>>>>> > +++ export -f check_path_variable
>>>>>> > +++ export -f add_to_csgshare
>>>>>> > +++ export -f globalize_dir
>>>>>> > +++ export -f globalize_file
>>>>>> > +++ export -f source_function
>>>>>> > +++ export -f csg_banner
>>>>>> > +++ export -f csg_calc
>>>>>> > +++ export -f show_csg_tables
>>>>>> > +++ export -f get_command_from_csg_tables
>>>>>> > +++ export -f source_wrapper
>>>>>> > +++ export -f find_in_csgshare
>>>>>> > ++++ type -p mktemp
>>>>>> > +++ '[' -z /bin/mktemp ']'
>>>>>> > +++ export -f enable_logging
>>>>>> > +++ export -f get_restart_file
>>>>>> > +++ export -f check_for_obsolete_xml_options
>>>>>> > +++ export -f command_not_found_handle
>>>>>> > +++ for i in simulation_finish checkpoint_exist get_simulation_setting
>>>>>> > +++ eval 'simulation_finish()' '{' command_not_found_handle 
>>>>>> > 'simulation_finish;' '}'
>>>>>> > +++ eval export -f simulation_finish
>>>>>> > ++++ export -f simulation_finish
>>>>>> > +++ for i in simulation_finish checkpoint_exist get_simulation_setting
>>>>>> > +++ eval 'checkpoint_exist()' '{' command_not_found_handle 
>>>>>> > 'checkpoint_exist;' '}'
>>>>>> > +++ eval export -f checkpoint_exist
>>>>>> > ++++ export -f checkpoint_exist
>>>>>> > +++ for i in simulation_finish checkpoint_exist get_simulation_setting
>>>>>> > +++ eval 'get_simulation_setting()' '{' command_not_found_handle 
>>>>>> > 'get_simulation_setting;' '}'
>>>>>> > +++ eval export -f get_simulation_setting
>>>>>> > ++++ export -f get_simulation_setting
>>>>>> > +++ unset i
>>>>>> > ++ export CSG_MASTER_PID=7293
>>>>>> > ++ CSG_MASTER_PID=7293
>>>>>> > ++ export CSG_MAINDIR=/home/martin/votca/csg-tutorials/spce/ibi_lammps
>>>>>> > ++ CSG_MAINDIR=/home/martin/votca/csg-tutorials/spce/ibi_lammps
>>>>>> > ++ [[ -n '' ]]
>>>>>> > ++ export 
>>>>>> > VOTCA_CSG_DEFAULTS=/usr/local/share/votca/xml/csg_defaults.xml
>>>>>> > ++ VOTCA_CSG_DEFAULTS=/usr/local/share/votca/xml/csg_defaults.xml
>>>>>> > ++ [[ -f /usr/local/share/votca/xml/csg_defaults.xml ]]
>>>>>> > ++ add_to_csgshare --at-the-end /usr/local/share/votca/scripts/inverse
>>>>>> > ++ local dir end=no
>>>>>> > ++ [[ --at-the-end = \-\-\a\t\-\t\h\e\-\e\n\d ]]
>>>>>> > ++ end=yes
>>>>>> > ++ shift
>>>>>> > ++ [[ -z /usr/local/share/votca/scripts/inverse ]]
>>>>>> > ++ for dirlist in '"$@"'
>>>>>> > ++ old_IFS='
>>>>>> > '
>>>>>> > ++ IFS=:
>>>>>> > ++ for dir in '$dirlist'
>>>>>> > ++ eval dir=/usr/local/share/votca/scripts/inverse
>>>>>> > +++ dir=/usr/local/share/votca/scripts/inverse
>>>>>> > ++ [[ -d /usr/local/share/votca/scripts/inverse ]]
>>>>>> > +++ globalize_dir /usr/local/share/votca/scripts/inverse
>>>>>> > +++ [[ -z /usr/local/share/votca/scripts/inverse ]]
>>>>>> > +++ [[ -d /usr/local/share/votca/scripts/inverse ]]
>>>>>> > +++ cd /usr/local/share/votca/scripts/inverse
>>>>>> > +++ pwd
>>>>>> > ++ dir=/usr/local/share/votca/scripts/inverse
>>>>>> > ++ [[ yes = \y\e\s ]]
>>>>>> > ++ export CSGSHARE=/usr/local/share/votca/scripts/inverse
>>>>>> > ++ CSGSHARE=/usr/local/share/votca/scripts/inverse
>>>>>> > ++ export PERL5LIB=/usr/local/share/votca/scripts/inverse
>>>>>> > ++ PERL5LIB=/usr/local/share/votca/scripts/inverse
>>>>>> > ++ export 
>>>>>> > PYTHONPATH=:/home/martin/gsd2xyz:/usr/local/share/votca/scripts/inverse
>>>>>> > ++ 
>>>>>> > PYTHONPATH=:/home/martin/gsd2xyz:/usr/local/share/votca/scripts/inverse
>>>>>> > ++ IFS='
>>>>>> > '
>>>>>> > ++ check_path_variable CSGSHARE PERL5LIB PYTHONPATH
>>>>>> > ++ local old_IFS dir
>>>>>> > ++ [[ -z CSGSHARE ]]
>>>>>> > ++ for var in '"$@"'
>>>>>> > ++ [[ -z CSGSHARE ]]
>>>>>> > ++ old_IFS='
>>>>>> > '
>>>>>> > ++ IFS=:
>>>>>> > ++ for dir in '${!var}'
>>>>>> > ++ [[ -z /usr/local/share/votca/scripts/inverse ]]
>>>>>> > ++ [[ /usr/local/share/votca/scripts/inverse = *votca* ]]
>>>>>> > ++ [[ -d /usr/local/share/votca/scripts/inverse ]]
>>>>>> > ++ IFS='
>>>>>> > '
>>>>>> > ++ for var in '"$@"'
>>>>>> > ++ [[ -z PERL5LIB ]]
>>>>>> > ++ old_IFS='
>>>>>> > '
>>>>>> > ++ IFS=:
>>>>>> > ++ for dir in '${!var}'
>>>>>> > ++ [[ -z /usr/local/share/votca/scripts/inverse ]]
>>>>>> > ++ [[ /usr/local/share/votca/scripts/inverse = *votca* ]]
>>>>>> > ++ [[ -d /usr/local/share/votca/scripts/inverse ]]
>>>>>> > ++ IFS='
>>>>>> > '
>>>>>> > ++ for var in '"$@"'
>>>>>> > ++ [[ -z PYTHONPATH ]]
>>>>>> > ++ old_IFS='
>>>>>> > '
>>>>>> > ++ IFS=:
>>>>>> > ++ for dir in '${!var}'
>>>>>> > ++ [[ -z '' ]]
>>>>>> > ++ continue
>>>>>> > ++ for dir in '${!var}'
>>>>>> > ++ [[ -z /home/martin/gsd2xyz ]]
>>>>>> > ++ [[ /home/martin/gsd2xyz = *votca* ]]
>>>>>> > ++ continue
>>>>>> > ++ for dir in '${!var}'
>>>>>> > ++ [[ -z /usr/local/share/votca/scripts/inverse ]]
>>>>>> > ++ [[ /usr/local/share/votca/scripts/inverse = *votca* ]]
>>>>>> > ++ [[ -d /usr/local/share/votca/scripts/inverse ]]
>>>>>> > ++ IFS='
>>>>>> > '
>>>>>> > + do_iterations=
>>>>>> > + waittime=10
>>>>>> > + unset CSGXMLFILE CSGENDING CSGDEBUG
>>>>>> > + shopt -s extglob
>>>>>> > + [[ -debug != --debug ]]
>>>>>> > + [[ debug = --debug ]]
>>>>>> > + case $1 in
>>>>>> > + export CSGDEBUG=yes
>>>>>> > + CSGDEBUG=yes
>>>>>> > + shift
>>>>>> > + [[ -options != --options ]]
>>>>>> > + [[ options = --options ]]
>>>>>> > + case $1 in
>>>>>> > + CSGXMLFILE=settings.xml
>>>>>> > + [[ -f settings.xml ]]
>>>>>> > ++ globalize_file settings.xml
>>>>>> > ++ [[ -z settings.xml ]]
>>>>>> > ++ [[ -f settings.xml ]]
>>>>>> > ++ local dir
>>>>>> > ++ [[ settings.xml = settings.xml ]]
>>>>>> > ++ dir=.
>>>>>> > +++ globalize_dir .
>>>>>> > +++ [[ -z . ]]
>>>>>> > +++ [[ -d . ]]
>>>>>> > +++ cd .
>>>>>> > +++ pwd
>>>>>> > ++ echo /home/martin/votca/csg-tutorials/spce/ibi_lammps/settings.xml
>>>>>> > + export 
>>>>>> > CSGXMLFILE=/home/martin/votca/csg-tutorials/spce/ibi_lammps/settings.xml
>>>>>> > + 
>>>>>> > CSGXMLFILE=/home/martin/votca/csg-tutorials/spce/ibi_lammps/settings.xml
>>>>>> > + shift 2
>>>>>> > + [[ '' != '' ]]
>>>>>> > + [[ -z /home/martin/votca/csg-tutorials/spce/ibi_lammps/settings.xml 
>>>>>> > ]]
>>>>>> > + [[ '' = \c\l\e\a\n ]]
>>>>>> > + enable_logging
>>>>>> > + local log
>>>>>> > + [[ -z '' ]]
>>>>>> > ++ csg_get_property cg.inverse.log_file
>>>>>> > Terminated
>>>>>> >
>>>>>> >
>>>>>> > Am Mittwoch, 22. August 2018 14:32:26 UTC+2 schrieb Christoph Junghans:
>>>>>> >>
>>>>>> >> On Wed, Aug 22, 2018 at 5:54 AM <[email protected]> wrote:
>>>>>> >> >
>>>>>> >> > No it did not create an inverse.log
>>>>>> >> Ok, try running:
>>>>>> >> $ csg_inverse --debug --options settings.xml
>>>>>> >> and post the output of that.
>>>>>> >>
>>>>>> >> Christoph
>>>>>> >> >
>>>>>> >> > Am Mittwoch, 22. August 2018 13:52:54 UTC+2 schrieb Christoph 
>>>>>> >> > Junghans:
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> On Wed, Aug 22, 2018 at 05:49 <[email protected]> wrote:
>>>>>> >> >>>
>>>>>> >> >>> Yes I tried that as well but then it just says: Terminated
>>>>>> >> >>
>>>>>> >> >> Does it have any output before that?
>>>>>> >> >>
>>>>>> >> >> Did it create an inverse.log? And if so what are the last couple 
>>>>>> >> >> of lines in there?
>>>>>> >> >>
>>>>>> >> >> Christoph
>>>>>> >> >>>
>>>>>> >> >>>
>>>>>> >> >>>
>>>>>> >> >>> Am Mittwoch, 22. August 2018 13:15:41 UTC+2 schrieb Christoph 
>>>>>> >> >>> Junghans:
>>>>>> >> >>>>
>>>>>> >> >>>> On Wed, Aug 22, 2018 at 4:59 AM <[email protected]> wrote:
>>>>>> >> >>>> >
>>>>>> >> >>>> > Hello,
>>>>>> >> >>>> > I do not know why votca will not run this tutorial. I changed 
>>>>>> >> >>>> > the settings.xml to point to the lammps executable but when I 
>>>>>> >> >>>> > run the run.sh script:
>>>>>> >> >>>> > running csg_inverse --options "settings.xml"
>>>>>> >> >>>> > ./run.sh: line 4:  6983 Terminated              csg_inverse 
>>>>>> >> >>>> > --options settings.xml
>>>>>> >> >>>> It there any output before that? Can you try to run "csg_inverse
>>>>>> >> >>>> --options settings.xml" directly?
>>>>>> >> >>>>
>>>>>> >> >>>> >
>>>>>> >> >>>> > this is what I get. I compiled the latest master version of 
>>>>>> >> >>>> > votca with the following options sucessfully .cmake  
>>>>>> >> >>>> > -DBUILD_CSGAPPS=ON -DBUILD_CTP=OFF -DBUILD_XTP=OFF 
>>>>>> >> >>>> > -DWITH_SQLITE3=OFF -DWITH_GMX=OFF
>>>>>> >> >>>> >
>>>>>> >> >>>> > I noticed that in the settings.xml the file CG_CG.pot is 
>>>>>> >> >>>> > mentioned but it is not in folder.
>>>>>> >> >>>> That is correct, CG_CG.pot gets generated every iteration for 
>>>>>> >> >>>> IBI by VOTCA.
>>>>>> >> >>>>
>>>>>> >> >>>> Christoph
>>>>>> >> >>>> >
>>>>>> >> >>>> > Here is also the settings.xml
>>>>>> >> >>>> > <cg>
>>>>>> >> >>>> >   <!-- example for a non-bonded interaction entry -->
>>>>>> >> >>>> >   <non-bonded>
>>>>>> >> >>>> >     <!-- name of the interaction -->
>>>>>> >> >>>> >     <name>CG-CG</name>
>>>>>> >> >>>> >     <!-- types involved in this interaction -->
>>>>>> >> >>>> >     <type1>1</type1>
>>>>>> >> >>>> >     <type2>1</type2>
>>>>>> >> >>>> >     <!-- dimension + grid spacing of tables for calculations 
>>>>>> >> >>>> > -->
>>>>>> >> >>>> >     <min>0.0</min>
>>>>>> >> >>>> >     <max>0.9</max>
>>>>>> >> >>>> >     <step>0.01</step>
>>>>>> >> >>>> >     <inverse>
>>>>>> >> >>>> >       <!-- target distribution (rdf)  -->
>>>>>> >> >>>> >       <target>CG-CG.dist.tgt</target>
>>>>>> >> >>>> >       <lammps>
>>>>>> >> >>>> >         <!-- name of the table for lammps run -->
>>>>>> >> >>>> >     <table>CG_CG.pot</table>
>>>>>> >> >>>> >     <table_begin>0.20</table_begin>
>>>>>> >> >>>> >     <table_bins>0.002</table_bins>
>>>>>> >> >>>> >       </lammps>
>>>>>> >> >>>> >     </inverse>
>>>>>> >> >>>> >   </non-bonded>
>>>>>> >> >>>> >
>>>>>> >> >>>> >   <!-- general options for inverse script -->
>>>>>> >> >>>> >   <inverse>
>>>>>> >> >>>> >     <!-- 300*0.00831451 lammps units -->
>>>>>> >> >>>> >     <kBT>2.49435</kBT>
>>>>>> >> >>>> >     <!-- use lammps as simulation program -->
>>>>>> >> >>>> >     <program>lammps</program>
>>>>>> >> >>>> >     <!-- lammps specific options -->
>>>>>> >> >>>> >     <lammps>
>>>>>> >> >>>> >       <command>/usr/bin/lammps-daily</command>
>>>>>> >> >>>> >       <!-- lammps script to run !-->
>>>>>> >> >>>> >       <script>spce.in</script>
>>>>>> >> >>>> >       <!-- topology to be used by  csg_stat !-->
>>>>>> >> >>>> >       <topol>spce.data</topol>
>>>>>> >> >>>> >       <!-- traj file created by lammps !-->
>>>>>> >> >>>> >       <traj>traj.dump</traj>
>>>>>> >> >>>> >     </lammps>
>>>>>> >> >>>> >     <initial_configuration>maindir</initial_configuration>
>>>>>> >> >>>> >     <!-- these files are copied for each new run -->
>>>>>> >> >>>> >     <filelist>spce.data spce.in</filelist>
>>>>>> >> >>>> >     <!-- do so many iterations -->
>>>>>> >> >>>> >     <iterations_max>300</iterations_max>
>>>>>> >> >>>> >     <!-- ibi: inverse biltzmann imc: inverse monte carlo -->
>>>>>> >> >>>> >     <method>ibi</method>
>>>>>> >> >>>> >   </inverse>
>>>>>> >> >>>> > </cg>
>>>>>> >> >>>> >
>>>>>> >> >>>> > Any help would be great.
>>>>>> >> >>>> > Thank you
>>>>>> >> >>>> >
>>>>>> >> >>>> > --
>>>>>> >> >>>> > You received this message because you are subscribed to the 
>>>>>> >> >>>> > Google Groups "votca" group.
>>>>>> >> >>>>
>>>>>> >> >>>> > To unsubscribe from this group and stop receiving emails from 
>>>>>> >> >>>> > it, send an email to [email protected].
>>>>>> >> >>>> > To post to this group, send email to [email protected].
>>>>>> >> >>>>
>>>>>> >> >>>> > Visit this group at https://groups.google.com/group/votca.
>>>>>> >> >>>> > For more options, visit https://groups.google.com/d/optout.
>>>>>> >> >>>>
>>>>>> >> >>>>
>>>>>> >> >>>>
>>>>>> >> >>>> --
>>>>>> >> >>>> Christoph Junghans
>>>>>> >> >>>> Web: http://www.compphys.de
>>>>>> >> >>>
>>>>>> >> >>> --
>>>>>> >> >>> You received this message because you are subscribed to the 
>>>>>> >> >>> Google Groups "votca" group.
>>>>>> >> >>> To unsubscribe from this group and stop receiving emails from it, 
>>>>>> >> >>> send an email to [email protected].
>>>>>> >> >>> To post to this group, send email to [email protected].
>>>>>> >> >>> Visit this group at https://groups.google.com/group/votca.
>>>>>> >> >>> For more options, visit https://groups.google.com/d/optout.
>>>>>> >> >>
>>>>>> >> >> --
>>>>>> >> >> Christoph Junghans
>>>>>> >> >> Web: http://www.compphys.de
>>>>>> >> >
>>>>>> >> > --
>>>>>> >> > You received this message because you are subscribed to the Google 
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>>>>>> >>
>>>>>> >>
>>>>>> >>
>>>>>> >> --
>>>>>> >> Christoph Junghans
>>>>>> >> Web: http://www.compphys.de
>>>>>> >
>>>>>> > --
>>>>>> > You received this message because you are subscribed to the Google 
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>>>>>> > For more options, visit https://groups.google.com/d/optout.
>>>>>>
>>>>>>
>>>>>>
>>>>>> --
>>>>>> Christoph Junghans
>>>>>> Web: http://www.compphys.de
>>>>
>>>> --
>>>> You received this message because you are subscribed to the Google Groups 
>>>> "votca" group.
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>>>> Visit this group at https://groups.google.com/group/votca.
>>>> For more options, visit https://groups.google.com/d/optout.
>
> --
> You received this message because you are subscribed to the Google Groups 
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-- 
Christoph Junghans
Web: http://www.compphys.de

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