Hello all, I am following the hybrid hexane example where the non-bonded interactions are obtained by force matching and the bonded interactions are obtained by Boltzmann Inversion. In hybrid_force_matching folder under both the master and the stable branches, the discussion seem to be mostly on getting the non-bonded interactions using force matching. I did not find the part where BI is used to extract only bonded forces. I tried following section 5.1 of the VOTCA manual which discusses the generation of exclusion lists. However, using the csg_boltzmann command with the --excl tag did not yield a list of exclusions of non-bonded interactions that it is supposed to give. Could someone help me identify what I am missing here? Thank you in advance!
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