Dear votca users,
I am trying to compile votca on my local desktop with the all the
prerequisite installed. Unfortunately, I am facing this error
Scanning dependencies of target gitversion-moo
Scanning dependencies of target gitversion-csg
Scanning dependencies of target gitversion-kmc
Scanning dependencies of target gitversion-ctp
Scanning dependencies of target gitversion
Scanning dependencies of target votca_tools_manpages
Scanning dependencies of target votca_compare_build
[ 0%] Built target votca_tools_manpages
Scanning dependencies of target csg_call_build
[ 0%] Generating votca_compare
Scanning dependencies of target csg_inverse_build
Scanning dependencies of target ctp_testsuite
[ 0%] Generating csg_call
Scanning dependencies of target ctp_update
[ 0%] Generating csg_inverse
Current git revision is b2da0c7
Current git revision is b2da0c7
Current git revision is b2da0c7
Current git revision is b2da0c7
Current git revision is b2da0c7
Current git revision is b2da0c7
Current git revision is b2da0c7
[ 0%] Built target gitversion-ctp
[ 0%] Built target gitversion-csg
[ 0%] Built target csg_inverse_build
[ 0%] Built target gitversion
Current git revision is b2da0c7
[ 0%] Built target csg_call_build
[ 0%] Built target ctp_update
[ 0%] Built target gitversion-kmc
Scanning dependencies of target votca_tools
[ 0%] Built target gitversion-moo
Current git revision is b2da0c7
[ 0%] Built target ctp_testsuite
Current git revision is b2da0c7
[ 0%] Built target votca_compare_build
[ 1%] Building CXX object
tools/src/libtools/CMakeFiles/votca_tools.dir/akimaspline.cc.o
[ 1%] Building CXX object
tools/src/libtools/CMakeFiles/votca_tools.dir/application.cc.o
[ 2%] Building CXX object
tools/src/libtools/CMakeFiles/votca_tools.dir/correlate.cc.o
[ 2%] Building CXX object
tools/src/libtools/CMakeFiles/votca_tools.dir/colors.cc.o
[ 2%] Building CXX object
tools/src/libtools/CMakeFiles/votca_tools.dir/crosscorrelate.cc.o
[ 3%] Building CXX object
tools/src/libtools/CMakeFiles/votca_tools.dir/cubicspline.cc.o
[ 3%] Building CXX object
tools/src/libtools/CMakeFiles/votca_tools.dir/datacollection.cc.o
[ 3%] Building CXX object
tools/src/libtools/CMakeFiles/votca_tools.dir/edge.cc.o
[ 4%] Building CXX object
tools/src/libtools/CMakeFiles/votca_tools.dir/edgecontainer.cc.o
[ 4%] Building CXX object
tools/src/libtools/CMakeFiles/votca_tools.dir/elements.cc.o
[ 5%] Building CXX object
tools/src/libtools/CMakeFiles/votca_tools.dir/globals.cc.o
[ 5%] Building CXX object
tools/src/libtools/CMakeFiles/votca_tools.dir/graph.cc.o
[ 5%] Building CXX object
tools/src/libtools/CMakeFiles/votca_tools.dir/graph_bf_visitor.cc.o
[ 6%] Building CXX object
tools/src/libtools/CMakeFiles/votca_tools.dir/graph_df_visitor.cc.o
[ 6%] Building CXX object
tools/src/libtools/CMakeFiles/votca_tools.dir/graphalgorithm.cc.o
In file included from /usr/include/c++/4.8/algorithm:62:0,
from
/home/anirbanm/programs/votca/tools/src/libtools/graph.cc:20:
/usr/include/c++/4.8/bits/stl_algo.h: In instantiation of
‘_RandomAccessIterator std::__unguarded_partition(_RandomAccessIterator,
_RandomAccessIterator, const _Tp&, _Compare) [with _RandomAccessIterator =
__gnu_cxx::__normal_iterator<std::pair<int, votca::tools::GraphNode>*,
std::vector<std::pair<int, votca::tools::GraphNode> > >; _Tp =
std::pair<int, votca::tools::GraphNode>; _Compare = bool (*)(std::pair<int,
votca::tools::GraphNode>&, std::pair<int, votca::tools::GraphNode>&)]’:
/usr/include/c++/4.8/bits/stl_algo.h:2296:78: required from
‘_RandomAccessIterator
std::__unguarded_partition_pivot(_RandomAccessIterator,
_RandomAccessIterator, _Compare) [with _RandomAccessIterator =
__gnu_cxx::__normal_iterator<std::pair<int, votca::tools::GraphNode>*,
std::vector<std::pair<int, votca::tools::GraphNode> > >; _Compare = bool
(*)(std::pair<int, votca::tools::GraphNode>&, std::pair<int,
votca::tools::GraphNode>&)]’
/usr/include/c++/4.8/bits/stl_algo.h:2337:62: required from ‘void
std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size,
_Compare) [with _RandomAccessIterator =
__gnu_cxx::__normal_iterator<std::pair<int, votca::tools::GraphNode>*,
std::vector<std::pair<int, votca::tools::GraphNode> > >; _Size = long int;
_Compare = bool (*)(std::pair<int, votca::tools::GraphNode>&,
std::pair<int, votca::tools::GraphNode>&)]’
/usr/include/c++/4.8/bits/stl_algo.h:5499:44: required from ‘void
std::sort(_RAIter, _RAIter, _Compare) [with _RAIter =
__gnu_cxx::__normal_iterator<std::pair<int, votca::tools::GraphNode>*,
std::vector<std::pair<int, votca::tools::GraphNode> > >; _Compare = bool
(*)(std::pair<int, votca::tools::GraphNode>&, std::pair<int,
votca::tools::GraphNode>&)]’
/home/anirbanm/programs/votca/tools/src/libtools/graph.cc:127:51:
required from here
/usr/include/c++/4.8/bits/stl_algo.h:2263:35: error: invalid initialization
of reference of type ‘std::pair<int, votca::tools::GraphNode>&’ from
expression of type ‘const std::pair<int, votca::tools::GraphNode>’
while (__comp(*__first, __pivot))
^
/usr/include/c++/4.8/bits/stl_algo.h:2266:34: error: invalid initialization
of reference of type ‘std::pair<int, votca::tools::GraphNode>&’ from
expression of type ‘const std::pair<int, votca::tools::GraphNode>’
while (__comp(__pivot, *__last))
^
make[2]: *** [tools/src/libtools/CMakeFiles/votca_tools.dir/graph.cc.o]
Error 1
make[2]: *** Waiting for unfinished jobs....
make[1]: *** [tools/src/libtools/CMakeFiles/votca_tools.dir/all] Error 2
make: *** [all] Error 2
Also, while running cmake configuration, I get some unusual warning messgaes
-- The following OPTIONAL packages have been found:
* Git
* FFTW3
* EXPAT
* UnixCommands
* OpenMP
* PkgConfig
* Doxygen
-- The following REQUIRED packages have been found:
* Threads
* GROMACS (required version >= 20160000)
* Boost (required version >= 1.48.0)
* Eigen3 (required version >= 3.3.0)
* SQLITE3
* VOTCA_TOOLS
* VOTCA_CSG
-- The following OPTIONAL packages have not been found:
* TXT2TAGS
* HDF5
* MKL
* CLANG_FORMAT (required version >= 7.0.1)
-- Configuring done
WARNING: Target "votca_tools" requests linking to directory
"/home/anirbanm/programs/sqlite3/lib". Targets may link only to
libraries. CMake is dropping the item.
WARNING: Target "votca_property" requests linking to directory
"/home/anirbanm/programs/sqlite3/lib". Targets may link only to
libraries. CMake is dropping the item.
WARNING: Target "votca_csg" requests linking to directory
"/home/anirbanm/programs/sqlite3/lib". Targets may link only to
libraries. CMake is dropping the item.
WARNING: Target "csg_fmatch" requests linking to directory
"/home/anirbanm/programs/sqlite3/lib". Targets may link only to
libraries. CMake is dropping the item.
WARNING: Target "csg_density" requests linking to directory
"/home/anirbanm/programs/sqlite3/lib". Targets may link only to
libraries. CMake is dropping the item.
WARNING: Target "csg_map" requests linking to directory
"/home/anirbanm/programs/sqlite3/lib". Targets may link only to
libraries. CMake is dropping the item.
WARNING: Target "csg_gmxtopol" requests linking to directory
"/home/anirbanm/programs/sqlite3/lib". Targets may link only to
libraries. CMake is dropping the item.
WARNING: Target "csg_dump" requests linking to directory
"/home/anirbanm/programs/sqlite3/lib". Targets may link only to
libraries. CMake is dropping the item.
WARNING: Target "csg_imcrepack" requests linking to directory
"/home/anirbanm/programs/sqlite3/lib". Targets may link only to
libraries. CMake is dropping the item.
WARNING: Target "csg_dlptopol" requests linking to directory
"/home/anirbanm/programs/sqlite3/lib". Targets may link only to
libraries. CMake is dropping the item.
WARNING: Target "csg_resample" requests linking to directory
"/home/anirbanm/programs/sqlite3/lib". Targets may link only to
libraries. CMake is dropping the item.
WARNING: Target "csg_property" requests linking to directory
"/home/anirbanm/programs/sqlite3/lib". Targets may link only to
libraries. CMake is dropping the item.
WARNING: Target "csg_stat" requests linking to directory
"/home/anirbanm/programs/sqlite3/lib". Targets may link only to
libraries. CMake is dropping the item.
WARNING: Target "csg_reupdate" requests linking to directory
"/home/anirbanm/programs/sqlite3/lib". Targets may link only to
libraries. CMake is dropping the item.
WARNING: Target "votca_csg_boltzmann" requests linking to directory
"/home/anirbanm/programs/sqlite3/lib". Targets may link only to
libraries. CMake is dropping the item.
WARNING: Target "csg_boltzmann" requests linking to directory
"/home/anirbanm/programs/sqlite3/lib". Targets may link only to
libraries. CMake is dropping the item.
WARNING: Target "template_serial" requests linking to directory
"/home/anirbanm/programs/sqlite3/lib". Targets may link only to
libraries. CMake is dropping the item.
WARNING: Target "template_threaded" requests linking to directory
"/home/anirbanm/programs/sqlite3/lib". Targets may link only to
libraries. CMake is dropping the item.
WARNING: Target "fluctuations" requests linking to directory
"/home/anirbanm/programs/sqlite3/lib". Targets may link only to
libraries. CMake is dropping the item.
WARNING: Target "partial_rdf" requests linking to directory
"/home/anirbanm/programs/sqlite3/lib". Targets may link only to
libraries. CMake is dropping the item.
WARNING: Target "radii" requests linking to directory
"/home/anirbanm/programs/sqlite3/lib". Targets may link only to
libraries. CMake is dropping the item.
WARNING: Target "orientcorr" requests linking to directory
"/home/anirbanm/programs/sqlite3/lib". Targets may link only to
libraries. CMake is dropping the item.
WARNING: Target "traj_force" requests linking to directory
"/home/anirbanm/programs/sqlite3/lib". Targets may link only to
libraries. CMake is dropping the item.
WARNING: Target "sphericalorder" requests linking to directory
"/home/anirbanm/programs/sqlite3/lib". Targets may link only to
libraries. CMake is dropping the item.
WARNING: Target "part_dist" requests linking to directory
"/home/anirbanm/programs/sqlite3/lib". Targets may link only to
libraries. CMake is dropping the item.
WARNING: Target "votca_ctp" requests linking to directory
"/home/anirbanm/programs/sqlite3/lib". Targets may link only to
libraries. CMake is dropping the item.
WARNING: Target "votca_moo" requests linking to directory
"/home/anirbanm/programs/sqlite3/lib". Targets may link only to
libraries. CMake is dropping the item.
WARNING: Target "votca_kmc" requests linking to directory
"/home/anirbanm/programs/sqlite3/lib". Targets may link only to
libraries. CMake is dropping the item.
WARNING: Target "ctp_parallel" requests linking to directory
"/home/anirbanm/programs/sqlite3/lib". Targets may link only to
libraries. CMake is dropping the item.
WARNING: Target "ctp_dump" requests linking to directory
"/home/anirbanm/programs/sqlite3/lib". Targets may link only to
libraries. CMake is dropping the item.
WARNING: Target "ctp_tools" requests linking to directory
"/home/anirbanm/programs/sqlite3/lib". Targets may link only to
libraries. CMake is dropping the item.
WARNING: Target "moo_overlap" requests linking to directory
"/home/anirbanm/programs/sqlite3/lib". Targets may link only to
libraries. CMake is dropping the item.
WARNING: Target "ctp_map" requests linking to directory
"/home/anirbanm/programs/sqlite3/lib". Targets may link only to
libraries. CMake is dropping the item.
WARNING: Target "ctp_run" requests linking to directory
"/home/anirbanm/programs/sqlite3/lib". Targets may link only to
libraries. CMake is dropping the item.
WARNING: Target "kmc_run" requests linking to directory
"/home/anirbanm/programs/sqlite3/lib". Targets may link only to
libraries. CMake is dropping the item.
-- Generating done
-- Build files have been written to: /home/anirbanm/programs/votca/build
Any suggestions would be highly appreciated.
Thank you.
Anirban
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