On Sun, Nov 3, 2019, 00:38 Maryam Sadeghi <[email protected]> wrote:
> Hi Christoph, > > Thank you very much for your help, as you instructed I am installing VOTCA > with cmake option -DBUILD_OWN_GROMACS=ON and have installed all the > prerequisite packages, however i cant get upgrade clang_format from version > 7 to 7.0.1 on my machine (ubuntu 18.04), which gives me the following error: > As the error says clang-format is optional, there must be another error above that. Christoph -- The following OPTIONAL packages have not been found: > > * CLANG_FORMAT (required version >= 7.0.1) > > -- Configuring incomplete, errors occurred! > See also "/home/maryam/APPS/votca/build/CMakeFiles/CMakeOutput.log". > See also "/home/maryam/APPS/votca/build/CMakeFiles/CMakeError.log". > > Hopefully, this will be the last error. > Best > Maryam > > On Saturday, November 2, 2019 at 9:05:37 PM UTC-7, Christoph Junghans > wrote: >> >> >> >> On Sat, Nov 2, 2019, 20:37 Maryam Sadeghi <[email protected]> wrote: >> >>> Thank you very much Christoph, can you also kindly let me know if i >>> would want to have VOTCA build its own gromacs, does that mean that I have >>> to remove the current version of gromacs I'm using from my machine? >>> >> No, you don't have to remove them, VOTCA will just not use them during >> the build. >> >> You might want to keep an mpi version of gromacs around to do the >> simulation in parallel. >> >> Christoph >> >> Best >>> Maryam >>> >>> On Saturday, November 2, 2019 at 5:34:11 PM UTC-7, Christoph Junghans >>> wrote: >>>> >>>> On Sat, Nov 2, 2019 at 5:56 PM Maryam Sadeghi >>>> <[email protected]> wrote: >>>> > >>>> > I am actually planning to use votca with gromacs, can you please >>>> advise how can i change gromacs library to a non-mpi shared version? >>>> The easiest way is to have VOTCA build its own gromacs with >>>> -DBUILD_OWN_GROMACS=ON. Another option is to build gromacs with >>>> -DGMX_MPI=OFF and -DBUILD_SHARED_LIBS=ON (and >>>> -DGMX_INSTALL_LEGACY_API=ON for gmx-2020 and newer) >>>> >>>> Christoph >>>> > >>>> > Best >>>> > Maryam >>>> > >>>> > On Friday, November 1, 2019 at 9:35:27 PM UTC-7, Maryam Sadeghi >>>> wrote: >>>> >> >>>> >> Thank you very much, fixed that. Now I'm getting the following error >>>> about gromacs library, I have the latest version of gromacs on my machine >>>> though: >>>> >> CMake Error at csg/CMakeModules/FindGROMACS.cmake:52 (message): >>>> >> Could not find a suitable gromacs library. gmx_version is not >>>> defined in >>>> >> the gromacs library, that is very very strange, take a look at the >>>> error >>>> >> message in /home/maryam/APPS/votca/build/CMakeFiles/CMakeError.log >>>> to find >>>> >> out what was going wrong. This most likely means that your >>>> gromacs version >>>> >> is too old, we need at least gromacs 2016! >>>> >> Call Stack (most recent call first): >>>> >> CMakeLists.txt:69 (_find_package) >>>> >> csg/CMakeLists.txt:73 (find_package) >>>> >> >>>> >> Regards, >>>> >> Maryam >>>> >> >>>> >> On Fri, Nov 1, 2019 at 8:12 PM Maryam Sadeghi <[email protected]> >>>> wrote: >>>> >>> >>>> >>> Hi >>>> >>> I am new to votco and am following the instructions on github to >>>> install votco-csg. I get the following error while installing VOTCA's next >>>> generation build system: >>>> >>> >>>> >>> CMake Error at CMakeLists.txt:69 (_find_package): >>>> >>> Could not find a package configuration file provided by "Eigen3" >>>> (requested >>>> >>> version 3.3.0) with any of the following names: >>>> >>> >>>> >>> Eigen3Config.cmake >>>> >>> eigen3-config.cmake >>>> >>> >>>> >>> Add the installation prefix of "Eigen3" to CMAKE_PREFIX_PATH or >>>> set >>>> >>> "Eigen3_DIR" to a directory containing one of the above files. >>>> If "Eigen3" >>>> >>> provides a separate development package or SDK, be sure it has >>>> been >>>> >>> installed. >>>> >>> Call Stack (most recent call first): >>>> >>> tools/CMakeLists.txt:74 (find_package) >>>> >>> >>>> >>> >>>> >>> -- Configuring incomplete, errors occurred! >>>> >>> >>>> >>> Could anyone help me to fix this issue? >>>> >>> Thank you >>>> >>> Maryam >>>> >>> >>>> >>> -- >>>> >>> You received this message because you are subscribed to the Google >>>> Groups "votca" group. >>>> >>> To unsubscribe from this group and stop receiving emails from it, >>>> send an email to [email protected]. >>>> >>> To view this discussion on the web visit >>>> https://groups.google.com/d/msgid/votca/1a4c92b3-e6e1-4248-a615-ec8385ab2bbc%40googlegroups.com. >>>> >>>> > >>>> > -- >>>> > You received this message because you are subscribed to the Google >>>> Groups "votca" group. >>>> > To unsubscribe from this group and stop receiving emails from it, >>>> send an email to [email protected]. >>>> > To view this discussion on the web visit >>>> https://groups.google.com/d/msgid/votca/24b70a23-f7b1-4c3e-b806-7f9c8d6db515%40googlegroups.com. >>>> >>>> >>>> >>>> >>>> -- >>>> Christoph Junghans >>>> Web: http://www.compphys.de >>>> >>> -- >>> You received this message because you are subscribed to the Google >>> Groups "votca" group. >>> To unsubscribe from this group and stop receiving emails from it, send >>> an email to [email protected]. >>> To view this discussion on the web visit >>> https://groups.google.com/d/msgid/votca/9ff2177b-6eba-4ea6-90dc-ced3a6eefebc%40googlegroups.com >>> <https://groups.google.com/d/msgid/votca/9ff2177b-6eba-4ea6-90dc-ced3a6eefebc%40googlegroups.com?utm_medium=email&utm_source=footer> >>> . >>> >> -- > You received this message because you are subscribed to the Google Groups > "votca" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To view this discussion on the web visit > https://groups.google.com/d/msgid/votca/ab6e4925-507a-44e9-81ad-054486d0455e%40googlegroups.com > <https://groups.google.com/d/msgid/votca/ab6e4925-507a-44e9-81ad-054486d0455e%40googlegroups.com?utm_medium=email&utm_source=footer> > . > -- You received this message because you are subscribed to the Google Groups "votca" group. 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