Hello,
I added -DENABLE_RPATH_INJECT=ON and moved from zsh to bash but got a new
error when running make:
error:
no member named 'nmolblock' in 'gmx_mtop_t'
for(int iblock=0; iblock<mtop.nmolblock; ++iblock)
~~~~ ^
I tried the stable version and the installation seemed to work but when
running csg_stat it says:
dyld: Library not loaded: @loader_path/../lib/libgromacs.4.dylib
Referenced from: /usr/local/votca/lib/libvotca_csg.6.dylib
Reason: image not found
Abort trap: 6
This is the procedure I'm following:
sudo rm -rf /usr/local/votca
sudo rm -rf votca
prefix=/usr/local/votca
version=stable
git clone -b ${version} --recursive https://github.com/votca/votca.git
cd votca
mkdir build
cd build
cmake -DBUILD_CSGAPPS=ON -DCMAKE_INSTALL_PREFIX=${prefix}
-DWITH_SQLITE3=OFF -DWITH_GMX=ON
-DGROMACS_INCLUDE_DIR=/usr/local/gromacs/include
-DGROMACS_LIBRARY=/usr/local/gromacs/lib/libgromacs.4.dylib
-DENABLE_RPATH_INJECT=ON
-DYLD_LIBRARY_PATH=/usr/local/votca/lib/libvotca_csg.6.dylib ..
make -j5
sudo make install
source /usr/local/votca/bin/VOTCARC.bash
And this is the content of the directories where the libraries are located:
ls /usr/local/gromacs/lib/
libgromacs.4.0.0.dylib libgromacs.4.dylib libgromacs.dylib
pkgconfig
ls /usr/local/votca/lib/
cmake libvotca_csg.6.dylib libvotca_csg.dylib
libvotca_tools.6.dylib libvotca_tools.dylib
Am I missing something?
Ramón
On Wednesday, April 1, 2020 at 8:41:08 PM UTC-6, Christoph Junghans wrote:
>
> On Wed, Apr 1, 2020 at 2:52 PM Christoph Junghans <[email protected]
> <javascript:>> wrote:
> >
> > On Wed, Apr 1, 2020 at 2:36 PM Ramon Gonzalez Perez
> > <[email protected] <javascript:>> wrote:
> > >
> > > I'm also getting that file. Did the installation work, then?
> > >
> > > Because when I try to use csg_stat I get the following message:
> > >
> > > dyld: Library not loaded: @rpath/libmkl_core.dylib
> > > Referenced from: /usr/local/votca/bin/csg_stat
> > You could try to adding -DENABLE_RPATH_INJECT=ON on your cmake comment.
> > Alternatively, set the DYLD_LIBRARY_PATH variable to where your libmkl
> > is located.
> >
> > > Reason: image not found
> > > zsh: abort csg_stat
> > Oh, you are using zsh, so the VOTCA.bash won't work for you as it is for
> bash.
> > I guess, you could try "setopt NULL_GLOB" in zsh to make the bash file
> work.
> Also fixed in the next release: https://github.com/votca/tools/pull/220
>
> Christoph
> >
> > Christoph
> > >
> > > On Wednesday, April 1, 2020 at 1:56:05 PM UTC-6, Christoph Junghans
> wrote:
> > >>
> > >> On Wed, Apr 1, 2020 at 1:30 PM Ramon Gonzalez Perez
> > >> <[email protected]> wrote:
> > >> >
> > >> > v1.4.1 through:
> > >> >
> > >> > sudo rm -rf /usr/local/votca
> > >> >
> > >> > prefix=/usr/local/votca
> > >> >
> > >> > version=v1.4.1
> > >> >
> > >> > git clone -b ${version} --recursive
> https://github.com/votca/votca.git
> > >> >
> > >> > cd votca
> > >> >
> > >> > mkdir build
> > >> >
> > >> > cd build
> > >> >
> > >> > cmake -DBUILD_CSGAPPS=ON -DCMAKE_INSTALL_PREFIX=${prefix}
> -DWITH_SQLITE3=OFF -DWITH_GMX=ON
> -DGROMACS_INCLUDE_DIR=/usr/local/gromacs/include
> -DGROMACS_LIBRARY=/usr/local/gromacs/lib/libgromacs.dylib ..
> > >> >
> > >> > sudo make -j5
> > >> No sudo needed here.
> > >> >
> > >> > sudo make install
> > >> I did exactly that on Linux and I get the following file:
> > >>
> > >> $ ls /usr/local/votca/share/votca/rc/
> > >> csg-completion.bash
> > >>
> > >> Christoph
> > >> >
> > >> >
> > >> > On Wednesday, April 1, 2020 at 1:23:14 PM UTC-6, Christoph Junghans
> wrote:
> > >> >>
> > >> >> On Wed, Apr 1, 2020 at 1:14 PM Ramon Gonzalez Perez
> > >> >> <[email protected]> wrote:
> > >> >> >
> > >> >> > Hello,
> > >> >> >
> > >> >> > I installed VOTCA on macOS but when I source
> /usr/local/votca/bin/VOTCARC.bash I get this error:
> > >> >> >
> > >> >> > /usr/local/votca/bin/VOTCARC.bash:29: no matches found:
> /usr/local/votca/share/votca/rc/*rc.bash
> > >> >> How did you install VOTCA? What version?
> > >> >>
> > >> >> Christoph
> > >> >> >
> > >> >> > Thanks,
> > >> >> >
> > >> >> > Ramón
> > >> >> >
> > >> >> > --
> > >> >> > You received this message because you are subscribed to the
> Google Groups "votca" group.
> > >> >> > To unsubscribe from this group and stop receiving emails from
> it, send an email to [email protected].
> > >> >> > To view this discussion on the web visit
> https://groups.google.com/d/msgid/votca/c19d41b6-7295-41d3-8fac-1366431f7601%40googlegroups.com.
>
>
> > >> >>
> > >> >>
> > >> >>
> > >> >> --
> > >> >> Christoph Junghans
> > >> >> Web: http://www.compphys.de
> > >> >
> > >> > --
> > >> > You received this message because you are subscribed to the Google
> Groups "votca" group.
> > >> > To unsubscribe from this group and stop receiving emails from it,
> send an email to [email protected].
> > >> > To view this discussion on the web visit
> https://groups.google.com/d/msgid/votca/10085817-cd1a-45e6-8054-8e570f7ec1ea%40googlegroups.com.
>
>
> > >>
> > >>
> > >>
> > >> --
> > >> Christoph Junghans
> > >> Web: http://www.compphys.de
> > >
> > > --
> > > You received this message because you are subscribed to the Google
> Groups "votca" group.
> > > To unsubscribe from this group and stop receiving emails from it, send
> an email to [email protected] <javascript:>.
> > > To view this discussion on the web visit
> https://groups.google.com/d/msgid/votca/23598d8a-56eb-4a45-a796-5e95a13c469d%40googlegroups.com.
>
>
> >
> >
> >
> > --
> > Christoph Junghans
> > Web: http://www.compphys.de
>
>
>
> --
> Christoph Junghans
> Web: http://www.compphys.de
>
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