Thanks I will have a look at it in the next few days and get back to you!

Just to clarify, csg_dump and csg_boltzmann are not printing the same
exclusions.
csg_dump prints the exclusions read for the topology file when used without
a mapping, and the exclusions generated by the coarse-grained bonded
interaction when used with a mapping file. The former is gone in atomistic
atom numbering, while the latter is done in coarse-grained atomic numbering.
While csg_boltzmann prints the exclusions in atomistic numbering generated
by the bonded interactions from the mapping to coarse-grained beads.

Christoph

On Sun, Dec 27, 2020 at 10:20 nancyfor <[email protected]> wrote:

> Here is the file
>
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