Dear VOTCA Users,

I am trying to use ibi for bonded interaction (bond,angle, and dihedral). 
The problem is when I am using bond distribution we do not have data for 
some ranges (like for bond distribution in this tutorial 
<https://github.com/votca/votca/tree/master/csg-tutorials/hexane/ibi_all>), 
so during the iteration some bonds length is  bigger or smaller than the 
table outer or inner cutoff and I get error in LAMMPS. does anyone has idea 
what can I do for this error?  is there any option in VOTCA to replace the 
zeros in the probability for bonds with some small values so I can increase 
the table cutoff or I should do it manually?
 
I am using LAMMPS for my ibi and here is an error I  have currently.

Per MPI rank memory allocation (min/avg/max) = 7.672 | 7.674 | 7.676 Mbytes
Step Time TotEng PotEng Volume Density Temp Press 
       0            0    963.12455   -1360.1188    151186.66     1.029793   
       600   -1094.7381 
    2000           20    928.00314   -1457.0206    151186.66     1.029793   
 615.95537   -1217.8225 
    4000           40    942.24742   -1472.8241    151186.66     1.029793   
 623.71551    917.70274 
    6000           60    925.95597   -1483.2126    151186.66     1.029793   
 622.19103    3122.7127 
    8000           80    921.17567   -1446.9757    151186.66     1.029793   
 611.59792     1398.679 
   10000          100    972.68412   -1498.2288    151186.66     1.029793   
 638.13709    3228.6631 
   12000          120    968.92421    -1504.366    151186.66     1.029793   
 638.75105    2570.6902 
   14000          140    973.39445   -1546.9816    151186.66     1.029793   
 650.91141   -2645.2069 
   16000          160    826.48486   -1573.7195    151186.66     1.029793   
 619.87591    164.50872 
ERROR on proc 20: Bond length > table outer cutoff: type 3 length 4.4888905 
(src/MOLECULE/bond_table.cpp:605)
Last command: run 50000


Best regards
Saeed

-- 
Join us on Slack: https://join.slack.com/t/votca/signup
--- 
You received this message because you are subscribed to the Google Groups 
"votca" group.
To unsubscribe from this group and stop receiving emails from it, send an email 
to [email protected].
To view this discussion on the web visit 
https://groups.google.com/d/msgid/votca/de34c1df-ca77-466b-a29d-3af382daed5en%40googlegroups.com.

Reply via email to