I'm helping Maurice with this.  We're running Apache on Linux with 
mod_wsgi.  This is a shared host environment where each hosted website is 
under the user's public_html directory.  Normally, we run symlinks from the 
docroot to the hosted website as follows:

ln -s /path/to/username/public_html/websitename /path/to/httpdocs/
websitename

And  the URL becomes http://www.bioinformatics.org/websitename

In this case, "websitename" is "refgene".

1. http://www.bioinformatics.org/refgene gives me an Invalid request
>
>
> What's the whole message? There should be some details.
>

That's it.  Is there a way to make it more verbose?

You want web2py in a directory called web2py. If you write an app called 
> refgene, it will live in web2py/applications/refgene.


Does it matter if the URL contains the name web2py or not?  We can name the 
directory itself anything internally, as long as the URL isn't 
http://www.bioinformatics.org/web2py.  An important part of the hosting is 
to give a website (refgene) its own URL.

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