I just pulled git and hg and there's a small difference (that was also 
already there a few days ago):

 Only in web2py.hg/applications/examples/static/js: modernizr-1.6.min.js
 Only in web2py.hg/applications: __init__.py
 Only in web2py.hg/applications/welcome/models: db.py.orig
 Only in web2py.git/applications/welcome/static/css: anytime.css
 Only in web2py.git/applications/welcome/static/js: anytime.js
 Only in web2py.git: .git
 Only in web2py.hg: .hg
 Only in web2py.hg: .hgignore
 Only in web2py.hg: .hgtags

Last 4 lines are fine, first 5 lines are probably unintended differences

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