I've had a quick look and it seems there is only the merge or leave it 
alone option.

I'd say to put a warning in the upgrade guide.

On Thursday, August 16, 2018 at 4:55:41 PM UTC-4, Thomas Keffer wrote:
>
> Yes, it would be nicer. How about a Pull Request that addresses the 
> problem?
>
> -tk
>
> On Thu, Aug 16, 2018 at 1:53 PM G Hammer <gary....@gmail.com <javascript:>> 
> wrote:
>
>> It would be nicer if either this were corrected or if the upgrade guide 
>> had a warning in it.
>> As there were no program changes in weewx.conf, I just moved the 3.8.1 
>> version back in place and wiped the web of all files.
>> The scheduled ftp put the site back to the desired state/look.
>>
>>
>> On Thursday, August 16, 2018 at 4:40:15 PM UTC-4, Thomas Keffer wrote:
>>>
>>> Yes, this is a known bug. Issue #217 
>>> <https://github.com/weewx/weewx/issues/217>.
>>>
>>> -tk
>>>
>>> On Thu, Aug 16, 2018 at 1:35 PM G Hammer <gary....@gmail.com> wrote:
>>>
>>>>
>>>> Update changed my skin to default. Now looking for what else it may 
>>>> have changed.
>>>> setup.by install & upgrade method.
>>>>
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